View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117R-Insertion-9 (Length: 678)
Name: NF3117R-Insertion-9
Description: NF3117R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117R-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 678
Target Start/End: Complemental strand, 47181893 - 47181215
Alignment:
| Q |
9 |
cgtagcacatgggttgggttgtcagttgtctcgcaacacacagtataaccccacatcattcacatttaccgtcatacaaacacaattcaatttcaagtct |
108 |
Q |
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| T |
47181893 |
cgtagcacatgagttgggttgtcagttgtctcgcaacacacagcataaccccacatcattcacatttatcgtcggacaaacacaattcaatttcaagtct |
47181794 |
T |
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| Q |
109 |
tgttgagacacttccttttccattacaaaattttcaatacnnnnnnnctcactannnnnnnaaataacaaatattcgatttgttcttgtatgaaaaaagt |
208 |
Q |
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| T |
47181793 |
tgttgagacacttccttttccattacaaaattttcaatactttttttctcactatttttttaaataacaaatattcgatttgttcttgtatgaaaaaagt |
47181694 |
T |
|
| Q |
209 |
agtatcttcnnnnnnnnnnnnnnnnnnnnntgtcctctcaacttaaggaataatttaataaaacccatgaaggttgattcgacttataaaaaattgattc |
308 |
Q |
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| T |
47181693 |
agtatcttcaaaaaaaaaaaaaaaa-----tgtcctctcaacttaaggaataatttaataaaacccatgaaggttgattcgacttataaaaaattgattc |
47181599 |
T |
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| Q |
309 |
atattatgaattcaatg---------------atgtgtcccctagtccacttcacctacaatggctacaaatttctcatagaagaaattacaaagattgt |
393 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
47181598 |
atattatgaattcaatgtctatcttgaccctgatgtgtccc-tagtccacttcacctacaatggctacaaatttttcataaaagaaattacaaagattgt |
47181500 |
T |
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| Q |
394 |
gaaatacggatatattgtccatgatggtgccttaggagttacgttacgtcacaaagaaagcggaaaagtaagtagtagattgttactcacctccaaatcc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47181499 |
gaaatacggatatattgtccatgatggtgccttaggagttacgttacgtcacaaagaaagcgcaaaagtaagtagtagattgttactcacctccaaatcc |
47181400 |
T |
|
| Q |
494 |
tacccgtccgtatattgatgtgtggaaggactacaaaaacaaatggttttgtattgtaaattgtgaaattgagttataccaagtagtttgacttgaaaat |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47181399 |
tacccgtccgtatattgatgtgtggaaggactacaaaaacaaatggttttgtattgtaaattgtgaaattgagttataccaagtagtttgacttgaaaat |
47181300 |
T |
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| Q |
594 |
gagagtgcaaagataagaagaaggagatctcactttcgtttcttcttgtctgaggccataaaacaaacactacatacacaaccac |
678 |
Q |
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| T |
47181299 |
gagagtgcaaagataagaagaaggagatctcactttcttttcttcttgtctgaggccataaaacaaacactacatacacaaccac |
47181215 |
T |
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