View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_high_10 (Length: 562)

Name: NF3117_high_10
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_high_10
NF3117_high_10
[»] chr1 (22 HSPs)
chr1 (20-329)||(37229878-37230202)
chr1 (508-562)||(8548755-8548809)
chr1 (508-559)||(19928934-19928985)
chr1 (508-562)||(15051434-15051488)
chr1 (509-562)||(3728669-3728722)
chr1 (507-562)||(8473715-8473770)
chr1 (508-558)||(3993933-3993983)
chr1 (517-559)||(20354024-20354066)
chr1 (517-559)||(20556840-20556882)
chr1 (517-559)||(38771571-38771613)
chr1 (506-559)||(13629335-13629388)
chr1 (507-559)||(3943906-3943958)
chr1 (508-555)||(19914400-19914447)
chr1 (523-562)||(29622510-29622549)
chr1 (508-559)||(19924688-19924739)
chr1 (509-559)||(3732442-3732492)
chr1 (508-561)||(6562248-6562301)
chr1 (509-562)||(44621203-44621256)
chr1 (507-555)||(19161825-19161873)
chr1 (507-547)||(29622545-29622585)
chr1 (507-559)||(30889993-30890045)
chr1 (505-537)||(30910114-30910146)
[»] chr8 (21 HSPs)
chr8 (507-562)||(22014178-22014233)
chr8 (508-559)||(22519684-22519735)
chr8 (508-562)||(36677645-36677699)
chr8 (509-562)||(184309-184362)
chr8 (506-559)||(7344646-7344699)
chr8 (517-559)||(17924043-17924085)
chr8 (509-562)||(21720-21773)
chr8 (506-555)||(2335240-2335289)
chr8 (518-559)||(17924372-17924413)
chr8 (509-562)||(23018619-23018672)
chr8 (509-562)||(26663119-26663172)
chr8 (517-558)||(32375593-32375634)
chr8 (508-558)||(42481459-42481509)
chr8 (518-559)||(483726-483767)
chr8 (506-559)||(489715-489768)
chr8 (504-562)||(1052487-1052545)
chr8 (525-559)||(8419354-8419388)
chr8 (517-559)||(30301164-30301205)
chr8 (509-562)||(1056287-1056340)
chr8 (509-558)||(42485628-42485677)
chr8 (506-554)||(184646-184694)
[»] chr3 (27 HSPs)
chr3 (507-562)||(9426563-9426618)
chr3 (508-562)||(35743666-35743720)
chr3 (509-562)||(3501981-3502034)
chr3 (507-562)||(46697643-46697698)
chr3 (509-562)||(2858042-2858095)
chr3 (508-559)||(3953304-3953355)
chr3 (508-559)||(8156441-8156492)
chr3 (517-559)||(6745415-6745457)
chr3 (517-559)||(30943131-30943173)
chr3 (509-559)||(41844083-41844133)
chr3 (506-559)||(16444539-16444592)
chr3 (509-562)||(25191855-25191908)
chr3 (518-559)||(42900120-42900161)
chr3 (507-559)||(46702114-46702166)
chr3 (509-562)||(1835413-1835463)
chr3 (508-559)||(2950266-2950317)
chr3 (509-559)||(34051435-34051485)
chr3 (509-562)||(50481469-50481522)
chr3 (506-562)||(50477111-50477167)
chr3 (508-559)||(2968014-2968065)
chr3 (508-559)||(46406713-46406764)
chr3 (508-559)||(49138514-49138565)
chr3 (508-562)||(29008819-29008873)
chr3 (509-559)||(34045342-34045392)
chr3 (509-559)||(46388892-46388942)
chr3 (517-559)||(54392117-54392159)
chr3 (509-562)||(42904268-42904321)
[»] chr4 (27 HSPs)
chr4 (509-562)||(30723055-30723108)
chr4 (509-562)||(49169183-49169236)
chr4 (506-562)||(37562996-37563052)
chr4 (508-562)||(31425404-31425458)
chr4 (509-559)||(39773630-39773680)
chr4 (506-559)||(49096440-49096493)
chr4 (509-562)||(54633746-54633799)
chr4 (508-559)||(55799649-55799700)
chr4 (520-562)||(40358366-40358408)
chr4 (509-555)||(46253421-46253467)
chr4 (508-562)||(40352299-40352353)
chr4 (508-561)||(37394181-37394234)
chr4 (508-555)||(21022980-21023027)
chr4 (509-560)||(30726829-30726880)
chr4 (524-559)||(49563789-49563824)
chr4 (509-559)||(41793265-41793315)
chr4 (509-559)||(49090381-49090431)
chr4 (509-562)||(1089670-1089723)
chr4 (510-559)||(1309203-1309252)
chr4 (518-559)||(6175790-6175831)
chr4 (506-555)||(26792337-26792386)
chr4 (506-562)||(49164994-49165048)
chr4 (506-562)||(1087791-1087847)
chr4 (507-555)||(14201619-14201667)
chr4 (507-555)||(40832579-40832627)
chr4 (507-555)||(51037560-51037608)
chr4 (506-554)||(54634109-54634157)
[»] chr2 (26 HSPs)
chr2 (509-562)||(5355617-5355670)
chr2 (508-559)||(18000165-18000216)
chr2 (509-562)||(7267530-7267583)
chr2 (509-562)||(30493293-30493346)
chr2 (508-559)||(208943-208994)
chr2 (517-559)||(5351821-5351863)
chr2 (509-559)||(43536036-43536086)
chr2 (508-558)||(44100888-44100938)
chr2 (518-559)||(10619942-10619983)
chr2 (509-558)||(15835301-15835350)
chr2 (518-559)||(41564581-41564622)
chr2 (506-559)||(42499684-42499737)
chr2 (518-562)||(38950612-38950656)
chr2 (507-555)||(43619235-43619283)
chr2 (507-562)||(15831059-15831114)
chr2 (508-559)||(17420501-17420552)
chr2 (507-558)||(39793895-39793946)
chr2 (509-555)||(3085971-3086017)
chr2 (517-559)||(3935772-3935814)
chr2 (509-555)||(10424774-10424820)
chr2 (509-559)||(17426487-17426537)
chr2 (509-555)||(21998148-21998194)
chr2 (506-560)||(28468572-28468626)
chr2 (509-555)||(29074095-29074141)
chr2 (509-559)||(42505851-42505901)
chr2 (509-558)||(39800742-39800791)
[»] chr5 (8 HSPs)
chr5 (508-559)||(37814515-37814566)
chr5 (509-562)||(28238073-28238126)
chr5 (518-562)||(28876586-28876630)
chr5 (505-559)||(14280989-14281043)
chr5 (506-559)||(19035136-19035189)
chr5 (506-559)||(19041206-19041259)
chr5 (508-555)||(27659873-27659920)
chr5 (507-560)||(37820935-37820988)
[»] chr7 (24 HSPs)
chr7 (509-559)||(603713-603763)
chr7 (509-562)||(10097850-10097903)
chr7 (509-555)||(7004-7050)
chr7 (517-559)||(30791097-30791139)
chr7 (504-562)||(41884212-41884270)
chr7 (517-559)||(43619647-43619689)
chr7 (509-562)||(35606723-35606776)
chr7 (507-555)||(27656971-27657019)
chr7 (508-555)||(8139-8186)
chr7 (509-555)||(16636335-16636381)
chr7 (509-555)||(17459257-17459303)
chr7 (509-555)||(17593911-17593957)
chr7 (508-562)||(41880447-41880501)
chr7 (509-559)||(48407410-48407460)
chr7 (508-559)||(10098266-10098317)
chr7 (507-562)||(35610501-35610556)
chr7 (509-555)||(13921356-13921402)
chr7 (509-559)||(20564007-20564057)
chr7 (509-559)||(20566448-20566498)
chr7 (506-560)||(42508115-42508169)
chr7 (517-559)||(45767950-45767991)
chr7 (509-562)||(15074314-15074367)
chr7 (509-553)||(7975704-7975748)
chr7 (507-555)||(28564627-28564675)
[»] chr6 (9 HSPs)
chr6 (508-558)||(30825983-30826033)
chr6 (509-559)||(18351732-18351782)
chr6 (509-559)||(27641840-27641890)
chr6 (508-559)||(11694149-11694200)
chr6 (517-559)||(1608260-1608302)
chr6 (517-562)||(30829737-30829782)
chr6 (518-558)||(26712313-26712353)
chr6 (508-559)||(27616648-27616699)
chr6 (509-555)||(6760964-6761010)
[»] scaffold0014 (1 HSPs)
scaffold0014 (507-559)||(84479-84531)
[»] scaffold0101 (1 HSPs)
scaffold0101 (506-559)||(41145-41198)
[»] scaffold0744 (1 HSPs)
scaffold0744 (506-562)||(508-564)
[»] scaffold1606 (1 HSPs)
scaffold1606 (509-559)||(50-100)
[»] scaffold0341 (1 HSPs)
scaffold0341 (508-561)||(17438-17491)
[»] scaffold0494 (1 HSPs)
scaffold0494 (507-555)||(11546-11594)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 37230202 - 37229878
Alignment:
Q  20 ttactaaacaagctaaagacaagattagtagctttcactagtctattataactcactcgtaatatctttgcatcacagcctagatctaagcacttaaacc 119  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  37230202 ttactaaacaagctaaagacaagattagtagctttcactagtatattataactcactcataatatgtttgcatcacagcctagatctaagcacttaaacc 37230103  T
Q  120 accttcttctttttcttcaatttgggattaggattttctcacatatttcctgtaatagtgcatccttgtgtaacgatcatgg-ccttttttcaaccttac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37230102 accttcttctttttcttcaatttgggattaggattttctcacatatttcctgtaatagtgcatccttgtgtaacgatcatggaccttttttcaaccttac 37230003  T
Q  219 agtaacgt--------tgtcattgttttgacatgattatttatcagatgatggaagga-tttcttattaaggaatccaatgat-gaaaaat----atgga 304  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||    |||||    
T  37230002 agtaacgttgtcattgtgtcattgttttgacatgattatttatcagatgatggaaggatttttttattaaggaatcgaatgatggaaaaatatgcatgga 37229903  T
Q  305 aggatgaaaagtgttatttattttt 329  Q
    |||||||||||||||||||||||||    
T  37229902 aggatgaaaagtgttatttattttt 37229878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 8548809 - 8548755
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8548809 tgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 8548755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 19928985 - 19928934
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  19928985 tgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 19928934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 15051488 - 15051434
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  15051488 tgagaattgctcttcccacatgttgtttggttgtgtcacacgagtaaaatacgaa 15051434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 3728669 - 3728722
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  3728669 gagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaa 3728722  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 8473715 - 8473770
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||||||||||||||| | || ||| ||||||||||||||||||||||||    
T  8473715 ttgagaattactgttcccacatatagtatggatgtgccacacgagtaaaatacgaa 8473770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 3993983 - 3993933
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3993983 tgagtattgctgttcccacatgttgtttggctgtgccacacgagtaaaata 3993933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 20354066 - 20354024
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  20354066 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 20354024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 20556840 - 20556882
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  20556840 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 20556882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 38771571 - 38771613
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38771571 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 38771613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 13629335 - 13629388
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | || |||||||||||||||||||||||||    
T  13629335 tttgagaattgctgttcccacatatagtatggttgtgccacacgagtaaaatac 13629388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 3943906 - 3943958
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  3943906 ttgagtattgctgtttccacatgttgtttggctgtgccacacgagtaaaatac 3943958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 19914400 - 19914447
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||    
T  19914400 tgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaa 19914447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 29622549 - 29622510
Alignment:
Q  523 ccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  29622549 ccacatgttgtttggctgtgccacacgagtaaaatacgaa 29622510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 19924688 - 19924739
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  19924688 tgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 19924739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 3732492 - 3732442
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  3732492 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 3732442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 6562301 - 6562248
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacga 561  Q
    |||||||| ||||||||||||||  |  ||||||||||||| ||||||||||||    
T  6562301 tgagaattgctgttcccacatgtgataaggttgtgccacactagtaaaatacga 6562248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 44621256 - 44621203
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  ||||||||| | | || ||||||||||||||||||||||||||||    
T  44621256 gagaattgttgttcccacgtatagtatggttgtgccacacgagtaaaatacgaa 44621203  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Original strand, 19161825 - 19161873
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||||||| ||||||||| | |||||| ||||||||| |||||||    
T  19161825 ttgagaattactattcccacatttggtttggctgtgccacaagagtaaa 19161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 29622585 - 29622545
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccaca 547  Q
    ||||| ||| ||||||||||||||||||||| |||||||||    
T  29622585 ttgagtattgctgttcccacatgttgtttggctgtgccaca 29622545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 30889993 - 30890045
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||  ||||||||||| | || ||| |||||||||||||||||||||    
T  30889993 ttgagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatac 30890045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 537
Target Start/End: Complemental strand, 30910146 - 30910114
Alignment:
Q  505 atttgagaattactgttcccacatgttgtttgg 537  Q
    ||||||||||| |||||||||||||||||||||    
T  30910146 atttgagaattgctgttcccacatgttgtttgg 30910114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 22014178 - 22014233
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  22014178 ttgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 22014233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 22519735 - 22519684
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  22519735 tgagaattactgttcccacatatagtttggttgtgccacacgagtaaaatac 22519684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 36677645 - 36677699
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  36677645 tgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 36677699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 184309 - 184362
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  184309 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 184362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 7344699 - 7344646
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  7344699 tttgagtattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 7344646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 17924043 - 17924085
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17924043 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 17924085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 21720 - 21773
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  ||||||||||| |||||||| ||||||||||||||||||||||||    
T  21720 gagaattgttgttcccacatcttgtttggctgtgccacacgagtaaaatacgaa 21773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 2335289 - 2335240
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  2335289 tttgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaa 2335240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 17924413 - 17924372
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  17924413 tgttcccacatgttgtttggctgtgccacacgagtaaaatac 17924372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 23018619 - 23018672
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  23018619 gagaattgctgtttccacatcttgtttggctgtgccacacgagtaaaatacgaa 23018672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 26663172 - 26663119
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| || ||||||||| |||||||| ||||||||||||||||||||||||    
T  26663172 gagaattgctattcccacattttgtttggctgtgccacacgagtaaaatacgaa 26663119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 32375593 - 32375634
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  32375593 ctgttcccacatgttgtttggctgtgccacacgagtaaaata 32375634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 42481459 - 42481509
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    |||||||| |||||| ||| |||||||||| ||||||||||||||||||||    
T  42481459 tgagaattgctgttctcacgtgttgtttggctgtgccacacgagtaaaata 42481509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 483726 - 483767
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  483726 tgttcccacatatagtttggttgtgccacacgagtaaaatac 483767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 489768 - 489715
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  489768 tttgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 489715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 562
Target Start/End: Original strand, 1052487 - 1052545
Alignment:
Q  504 tatttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||| ||||||| |||||||||||| | || ||| |||||||||| |||||||||||||    
T  1052487 tattagagaattgctgttcccacatatagtatggatgtgccacaccagtaaaatacgaa 1052545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 559
Target Start/End: Original strand, 8419354 - 8419388
Alignment:
Q  525 acatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||| |||||||||||||||||||||    
T  8419354 acatgttgtttggctgtgccacacgagtaaaatac 8419388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 30301164 - 30301205
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  30301164 ctgttcccacatgttgtttgct-gtgccacacgagtaaaatac 30301205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 1056340 - 1056287
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  ||||||||||| |||||||  |||| |||||||||||||||||||    
T  1056340 gagaattgttgttcccacatcttgtttgactgtgtcacacgagtaaaatacgaa 1056287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 42485677 - 42485628
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    ||||||| |||||||||||| | || ||| ||||||||||||||||||||    
T  42485677 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaata 42485628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 184694 - 184646
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaa 554  Q
    |||||||||| |||||||||||| | || ||| ||||||||||||||||    
T  184694 tttgagaattgctgttcccacatatggtatggctgtgccacacgagtaa 184646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 9426563 - 9426618
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9426563 ttgagaattgctgttcccacatgttgtttggttgtaccacacgagtaaaatacgaa 9426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 35743720 - 35743666
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  35743720 tgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 35743666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 3502034 - 3501981
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  3502034 gagaattgttgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 3501981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 46697643 - 46697698
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  46697643 ttgagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaa 46697698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 2858095 - 2858042
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  2858095 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 2858042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 3953355 - 3953304
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  3953355 tgagtattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 3953304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 8156441 - 8156492
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  8156441 tgagtattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 8156492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 6745457 - 6745415
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  6745457 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 6745415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 30943131 - 30943173
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30943131 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 30943173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 41844083 - 41844133
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||||    
T  41844083 gagaattgctcttcccacatgttgtttggctgtgccacacgagtaaaatac 41844133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 16444539 - 16444592
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | || |||||||||||||||||||||||||    
T  16444539 tttgagaattgctgttcccacatatagtatggttgtgccacacgagtaaaatac 16444592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 25191855 - 25191908
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| || ||||||||||||||| || ||||||||||||||||||||||||    
T  25191855 gagaattgctcttcccacatgttgttcggctgtgccacacgagtaaaatacgaa 25191908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 42900120 - 42900161
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  42900120 tgttcccacatgttgtttggctgtgccacacgagtaaaatac 42900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 46702166 - 46702114
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||| |||||||||||| | || |||||||||||||||||||||||||    
T  46702166 ttgagaattgctgttcccacatatagtatggttgtgccacacgagtaaaatac 46702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 1835463 - 1835413
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||||||||    
T  1835463 gagaattgctgttcccacatgtt---tggttgtgccacacgagtaaaatacgaa 1835413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 2950266 - 2950317
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | ||||||||||| ||||||||||||||||    
T  2950266 tgagaattgctgttcccacatatagtttggttgtgtcacacgagtaaaatac 2950317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 34051485 - 34051435
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | |||||| |||||||||||||||||||||    
T  34051485 gagaattgctgttcccacatatagtttggctgtgccacacgagtaaaatac 34051435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 50481522 - 50481469
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| |||||||||||| | || |||||||||||||| |||||||||||||    
T  50481522 gagaattgctgttcccacatatagtatggttgtgccacaccagtaaaatacgaa 50481469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 50477111 - 50477167
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||||  ||||||||||| |||||||  ||||||||| ||||||||||||||    
T  50477111 tttgagaattgttgttcccacatcttgtttgactgtgccacatgagtaaaatacgaa 50477167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 2968065 - 2968014
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  2968065 tgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 2968014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 46406764 - 46406713
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | |||||| |||| ||||||||||||||||    
T  46406764 tgagaattgctgttcccacatatagtttggctgtgtcacacgagtaaaatac 46406713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 49138514 - 49138565
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | |||||| ||||||||| |||||||||||    
T  49138514 tgagaattgctgttcccacatatagtttggctgtgccacatgagtaaaatac 49138565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 29008819 - 29008873
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||  ||||||||||| | || ||| ||||||||||||||||||||||||    
T  29008819 tgagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaa 29008873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 34045342 - 34045392
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  34045342 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 34045392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 46388892 - 46388942
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  46388892 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 46388942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 54392159 - 54392117
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||| | |||||| |||||||||||||||||||||    
T  54392159 ctgttcccacatatagtttggctgtgccacacgagtaaaatac 54392117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 42904321 - 42904268
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| |||||||||||| | || ||| |||||||||| |||||||||||||    
T  42904321 gagaattgctgttcccacatatagtatggctgtgccacaccagtaaaatacgaa 42904268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 30723055 - 30723108
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30723055 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 30723108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 49169236 - 49169183
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  49169236 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 49169183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 37562996 - 37563052
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  37562996 tttgagaattgctgttcccacatgttgtttggctgtgtcacacgagtaaaatacgaa 37563052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 31425458 - 31425404
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  31425458 tgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 31425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 39773680 - 39773630
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  39773680 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 39773630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 49096493 - 49096440
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  49096493 tttgagaattgctgttcccacatatagtttggttgtgccacacgagtaaaatac 49096440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 54633746 - 54633799
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  54633746 gagaattgctgttcccacatgttgtttgactgtgccacacgagtaaaatacgaa 54633799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 55799700 - 55799649
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  55799700 tgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatac 55799649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 520 - 562
Target Start/End: Complemental strand, 40358408 - 40358366
Alignment:
Q  520 ttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  40358408 ttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 40358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 46253421 - 46253467
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  46253421 gagaattactgttcccacatatagtttggttgtgccacacgagtaaa 46253467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 40352299 - 40352353
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||  ||||||||||| | || ||||||||||||||||||||||||||||    
T  40352299 tgagaattgttgttcccacatatagtatggttgtgccacacgagtaaaatacgaa 40352353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 508 - 561
Target Start/End: Original strand, 37394181 - 37394234
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacga 561  Q
    ||||||||||||||||||||| |  | |||||||||||||| ||||||||||||    
T  37394181 tgagaattactgttcccacatttgatatggttgtgccacactagtaaaatacga 37394234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 21023027 - 21022980
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||| |||||||||||| | |||||| |||||||||||||||||    
T  21023027 tgagaattgctgttcccacatttggtttggctgtgccacacgagtaaa 21022980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 30726880 - 30726829
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacg 560  Q
    ||||||| |||||||||||| | || ||| ||||||||||||||||||||||    
T  30726880 gagaattgctgttcccacatatagtatggatgtgccacacgagtaaaatacg 30726829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 559
Target Start/End: Original strand, 49563789 - 49563824
Alignment:
Q  524 cacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||| |||||||||||||||||||||    
T  49563789 cacatgttgtttggctgtgccacacgagtaaaatac 49563824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 41793265 - 41793315
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | |||||| ||||||| |||||||||||||    
T  41793265 gagaattgctgttcccacatatagtttggctgtgccatacgagtaaaatac 41793315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 49090381 - 49090431
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  49090381 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 49090431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 1089723 - 1089670
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  ||||||||||| | || ||| ||||||||||||||||||||||||    
T  1089723 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaa 1089670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 1309252 - 1309203
Alignment:
Q  510 agaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||| ||| |||||||| | || |||||||||||||||||||||||||    
T  1309252 agaattgctgctcccacatatagtatggttgtgccacacgagtaaaatac 1309203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 6175790 - 6175831
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||| | |||||| |||||||||||||||||||||    
T  6175790 tgttcccacatatagtttggctgtgccacacgagtaaaatac 6175831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 26792386 - 26792337
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  26792386 tttgagaattgttgttcccacatttggtttggctgtgccacacgagtaaa 26792337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 49164994 - 49165048
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||| ||||||||| ||   || ||||||||||||||||||||||||||||    
T  49164994 tttgagaattgctgttcccatata--gtatggttgtgccacacgagtaaaatacgaa 49165048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 1087791 - 1087847
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||| |||||||||||| | || ||| |||||||||  |||||||||||||    
T  1087791 tttgagaattgctgttcccacatatagtatggctgtgccacatcagtaaaatacgaa 1087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 14201667 - 14201619
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||| |||||||||||| | |||||| | |||||||||||||||    
T  14201667 ttgagaattgctgttcccacatttggtttggctatgccacacgagtaaa 14201619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Original strand, 40832579 - 40832627
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||| |||||||||||| | |||||| | |||||||||||||||    
T  40832579 ttgagaattgctgttcccacatttggtttggctatgccacacgagtaaa 40832627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 51037608 - 51037560
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  51037608 ttgagaattgttgttcccacatttagtttggctgtgccacacgagtaaa 51037560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 54634157 - 54634109
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaa 554  Q
    |||||||||| |||||||||||| | || ||| ||||||||||||||||    
T  54634157 tttgagaattgctgttcccacatatggtatggctgtgccacacgagtaa 54634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 5355670 - 5355617
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  5355670 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 5355617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 18000165 - 18000216
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18000165 tgagtattgctgttcccacatgttgtttggttgtgccacacgagtaaaatac 18000216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 7267583 - 7267530
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7267583 gagaattgctgtttccacatgttgtttggctgtgccacacgagtaaaatacgaa 7267530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 30493293 - 30493346
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  30493293 gagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatacgaa 30493346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 208943 - 208994
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  208943 tgaggattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 208994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 5351863 - 5351821
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  5351863 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 5351821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 43536036 - 43536086
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  43536036 gagaattgctgttcccacatcttgtttggctgtgccacacgagtaaaatac 43536086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 44100938 - 44100888
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  44100938 tgagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaata 44100888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Original strand, 10619942 - 10619983
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  10619942 tgttcccacatgttgtttggctgtgccacacgagtaaaatac 10619983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 15835350 - 15835301
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  15835350 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaata 15835301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 41564622 - 41564581
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  41564622 tgttcccacatgttgtttggctgtgccacacgagtaaaatac 41564581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 42499684 - 42499737
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | |||||| |||||||||||||||||||||    
T  42499684 tttgagaattgctgttcccacatatagtttggctgtgccacacgagtaaaatac 42499737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 38950656 - 38950612
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  38950656 tgttcccacatgttgtttggctgtgtcgcacgagtaaaatacgaa 38950612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 43619283 - 43619235
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||| |||||||||||| | |||||| |||||||||||||||||    
T  43619283 ttgagaattgctgttcccacatttggtttggctgtgccacacgagtaaa 43619235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 15831059 - 15831114
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||  ||||||||||| | || ||| ||||||||||||||||||||||||    
T  15831059 ttgagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaa 15831114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 17420501 - 17420552
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  17420501 tgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 17420552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 39793895 - 39793946
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    ||||||||| |||||||||||| | || ||| ||||||||||||||||||||    
T  39793895 ttgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaata 39793946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 3085971 - 3086017
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||    
T  3085971 gagaattgttgttcccacatttagtttggttgtgccacacgagtaaa 3086017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 3935772 - 3935814
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||| | |||||| |||||||||||||||||||||    
T  3935772 ctgttcccacatatagtttggctgtgccacacgagtaaaatac 3935814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 10424774 - 10424820
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||| |||||||||||| | |||||| |||||||||||||||||    
T  10424774 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaa 10424820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 17426537 - 17426487
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||  ||||||||||| | |||||| |||||||||||||||||||||    
T  17426537 gagaattgttgttcccacatatagtttggctgtgccacacgagtaaaatac 17426487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 21998148 - 21998194
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||    
T  21998148 gagaattgatgttcccacatatagtttggttgtgccacacgagtaaa 21998194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Original strand, 28468572 - 28468626
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacg 560  Q
    ||||||||||  ||||||||| | | |||||| ||||||||||||||||||||||    
T  28468572 tttgagaattgttgttcccacgtatagtttggctgtgccacacgagtaaaatacg 28468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 29074141 - 29074095
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||    
T  29074141 gagaattgttgttcccacatttggtttggttgtgccacacgagtaaa 29074095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 42505901 - 42505851
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  42505901 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 42505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 39800791 - 39800742
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    ||||||| |||||||||||| | || ||| ||||||||||||||||||||    
T  39800791 gagaattgctgttcccacatatagtatggctgtgccacacgagtaaaata 39800742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 37814515 - 37814566
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  37814515 tgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 37814566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 28238073 - 28238126
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||||||||    
T  28238073 gagaattgctcttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 28238126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 28876586 - 28876630
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  28876586 tgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 28876630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 505 - 559
Target Start/End: Complemental strand, 14281043 - 14280989
Alignment:
Q  505 atttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  14281043 atttgagtattgctgttcccacatgttgtttggctgtgtcacacgagtaaaatac 14280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 19035136 - 19035189
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | |||||  |||||||||||||||||||||    
T  19035136 tttgagaattgctgttcccacatatagtttgactgtgccacacgagtaaaatac 19035189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 19041259 - 19041206
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  19041259 tttgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 19041206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 27659873 - 27659920
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||| |||||||||||| | |||||| |||||||||||||||||    
T  27659873 tgagaattgctgttcccacatttggtttggctgtgccacacgagtaaa 27659920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 37820988 - 37820935
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacg 560  Q
    |||||||||  ||||||||||| | || ||||||||||||||||||||| ||||    
T  37820988 ttgagaattgttgttcccacatatagtatggttgtgccacacgagtaaattacg 37820935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 603713 - 603763
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  603713 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaatac 603763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 10097850 - 10097903
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  10097850 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaaatacgaa 10097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 7004 - 7050
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  7004 gagaattgctgttcccacatgttgtttggctgtgccacacgagtaaa 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 30791139 - 30791097
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  30791139 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 30791097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 504 - 562
Target Start/End: Complemental strand, 41884270 - 41884212
Alignment:
Q  504 tatttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||| ||||||| || |||||||||||||| ||| ||||||||||||||||||||||||    
T  41884270 tattagagaattgctattcccacatgttgtgtggctgtgccacacgagtaaaatacgaa 41884212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 43619647 - 43619689
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  43619647 ctgttcccacatgttgtttggctgtgccacacgagtaaaatac 43619689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 35606723 - 35606776
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||||||||    
T  35606723 gagaattgttgttcccacatgttgtttgcctgtgccacacgagtaaaatacgaa 35606776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 555
Target Start/End: Original strand, 27656971 - 27657019
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  27656971 ttgagaattgctgttcccacatttggtttggttgtgccacacgagtaaa 27657019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 8186 - 8139
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  8186 tgagaattgctgttcccacatgttgtttggctgtgccacacaagtaaa 8139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 16636381 - 16636335
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||    
T  16636381 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaa 16636335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 17459257 - 17459303
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||    
T  17459257 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaa 17459303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 17593957 - 17593911
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||    
T  17593957 gagaattgttgttcccacatgttgtttggctgtgccacacgagtaaa 17593911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 41880447 - 41880501
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||  ||||||||||| | || ||||||||||||||||||||||||||||    
T  41880447 tgagaattgttgttcccacatatagtatggttgtgccacacgagtaaaatacgaa 41880501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 48407460 - 48407410
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| || |||||||||||||||||| |||||||||||||||| ||||    
T  48407460 gagaattgctcttcccacatgttgtttggctgtgccacacgagtaatatac 48407410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 10098266 - 10098317
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||  ||||||||||| | |||||| |||||||||||||||||||||    
T  10098266 tgagaattgttgttcccacatatagtttggctgtgccacacgagtaaaatac 10098317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 562
Target Start/End: Complemental strand, 35610556 - 35610501
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||| |||||||||||| | || ||| |||||||||| |||||||||||||    
T  35610556 ttgagaattgctgttcccacatatagtatggctgtgccacaccagtaaaatacgaa 35610501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 13921402 - 13921356
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||    
T  13921402 gagaattgttgttcccacatttggtttggttgtgccacacgagtaaa 13921356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Original strand, 20564007 - 20564057
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||||||||| | || ||||||||||| |||||||||||||    
T  20564007 gagaattgctgttcccacatatagtatggttgtgccatacgagtaaaatac 20564057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 20566498 - 20566448
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||  ||||||||||| | |||||| |||||||||||||||||||||    
T  20566498 gagaattgttgttcccacatatagtttggctgtgccacacgagtaaaatac 20566448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 42508169 - 42508115
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacg 560  Q
    ||||||||||  ||||||||||| | || ||| ||||||||||||||||||||||    
T  42508169 tttgagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacg 42508115  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 559
Target Start/End: Complemental strand, 45767991 - 45767950
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  45767991 ctgttcccacat-ttgtttggctgtgccacacgagtaaaatac 45767950  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 15074367 - 15074314
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||  ||||||||||| | || ||| ||||||||||||||||||||||||    
T  15074367 gagaattgttgttcccacatatagtatggctgtgccacacgagtaaaatacgaa 15074314  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 7975748 - 7975704
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagta 553  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||    
T  7975748 gagaattgttgttcccacatttggtttggttgtgccacacgagta 7975704  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 28564675 - 28564627
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||||  |||||||| || | ||||||||||||||||||||||||    
T  28564675 ttgagaattgttgttcccatatttggtttggttgtgccacacgagtaaa 28564627  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 30825983 - 30826033
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  30825983 tgagaattgctgttcccacatgttgtttggctgtgccacacgagtaaaata 30826033  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 18351782 - 18351732
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  18351782 gagaattgctgttctcacatgttgtttggctgtgccacacgagtaaaatac 18351732  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 27641890 - 27641840
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  27641890 gagaattgctgttcccacatgttgtttggctgtgccacactagtaaaatac 27641840  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 11694200 - 11694149
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | |||||| |||||||||||||||||||||    
T  11694200 tgagaattgctgttcccacatatagtttggctgtgccacacgagtaaaatac 11694149  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 1608260 - 1608302
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  1608260 ctgttcccacatgttgtttggctgtgccacacgtgtaaaatac 1608302  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 562
Target Start/End: Complemental strand, 30829782 - 30829737
Alignment:
Q  517 ctgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    |||||||||||| | || ||||||||||||||||||||||||||||    
T  30829782 ctgttcccacatatagtatggttgtgccacacgagtaaaatacgaa 30829737  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 26712353 - 26712313
Alignment:
Q  518 tgttcccacatgttgtttggttgtgccacacgagtaaaata 558  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  26712353 tgttcccacatgttgtttagctgtgccacacgagtaaaata 26712313  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 27616648 - 27616699
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  27616648 tgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 27616699  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 6761010 - 6760964
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    ||||||| |||||||||||| | |||||| |||||||||||||||||    
T  6761010 gagaattgctgttcccacatttggtttggctgtgccacacgagtaaa 6760964  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 84479 - 84531
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    ||||||||| |||||||||||| | |||||| |||||||||||||||||||||    
T  84479 ttgagaattgctgttcccacatatagtttggctgtgccacacgagtaaaatac 84531  T

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Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 41198 - 41145
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||||| |||||||||||| | || ||| |||||||||||||||||||||    
T  41198 tttgagaattgctgttcccacatatagtatggctgtgccacacgagtaaaatac 41145  T

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Target: scaffold0744 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 562
Target Start/End: Complemental strand, 564 - 508
Alignment:
Q  506 tttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacgaa 562  Q
    ||||||||||  ||||||||||| | || |||||||||||||| |||||||||||||    
T  564 tttgagaattgttgttcccacatatagtatggttgtgccacaccagtaaaatacgaa 508  T

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Target: scaffold1606 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 559
Target Start/End: Complemental strand, 100 - 50
Alignment:
Q  509 gagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatac 559  Q
    |||||||  ||||||||||| | |||||| |||||||||||||||||||||    
T  100 gagaattgttgttcccacatatagtttggctgtgccacacgagtaaaatac 50  T

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Target: scaffold0341 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 561
Target Start/End: Complemental strand, 17491 - 17438
Alignment:
Q  508 tgagaattactgttcccacatgttgtttggttgtgccacacgagtaaaatacga 561  Q
    |||||||| ||||||||||||||  |  ||||||||||||| ||||||||||||    
T  17491 tgagaattgctgttcccacatgtgataaggttgtgccacactagtaaaatacga 17438  T

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Target: scaffold0494 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 11594 - 11546
Alignment:
Q  507 ttgagaattactgttcccacatgttgtttggttgtgccacacgagtaaa 555  Q
    |||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11594 ttgagaattgttgttcccacatttggtttggctgtgccacacgagtaaa 11546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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