View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_high_2 (Length: 849)
Name: NF3117_high_2
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 169 - 834
Target Start/End: Original strand, 26840734 - 26841418
Alignment:
| Q |
169 |
cacacgcccacaaaaaacaactaactacgacgtcgacaataggataaccacacctttgagacaaacaaaccttccaccgaaattggaggaactaaatgag |
268 |
Q |
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| T |
26840734 |
cacacgcccacaaaaaacaactaactacgacgttgacaataggacaaccacacctttgagacaaacgaaccttccaccgaaattggaggaactaaatgag |
26840833 |
T |
|
| Q |
269 |
tccactaatgtgttttatgtctatacctttctttagtcgatccataatggtgtataagaaaccataaagagaagaaataaaagaacccaaatctatgttc |
368 |
Q |
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| T |
26840834 |
tccactaatgtgctttatgtctatacctttctttagttgatccataatggtgtataagaaaccataaagagaagaaat-aaagaacccaaagctatgttc |
26840932 |
T |
|
| Q |
369 |
ttttcgacttaaaacaagacaactattgaacgataaccatataaccaatactaactaaaaaacttgttgaactaacacaacat---gaaggcgttgtgct |
465 |
Q |
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| T |
26840933 |
ttttcgacttaaaacaaggcaactacttaacgataaccatataaccaatactaactaaaaaacttgttgaactaacacaacatgaagaaggcgttgtgct |
26841032 |
T |
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| Q |
466 |
ctacatctgtaacatctcctgaagactcaatattatat--------cataaacgcggcctagttggaaatggactttgaaaaatggaatcccgtgggagg |
557 |
Q |
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| T |
26841033 |
ctacatctgtaacatctcctgaagactcaatattatatatattttgcataaatgcggcctagttggaaatggactttgaaaaatggaatcccgtgggagg |
26841132 |
T |
|
| Q |
558 |
gatgggggcatcaaa---------agttgtaacccaataattgaaaagccaagtatgtcagccacatcaagaattgagtggattatcatatcattggaaa |
648 |
Q |
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| T |
26841133 |
gatgggggcatcaaaagttgtaggagttgtaaaccaataattgaaaagccaagtatggcagccacatcaagaattgagtgtattatcatatcattggaaa |
26841232 |
T |
|
| Q |
649 |
atatgaaagtattagaacttactgacatgtaggtgaggaaaccgtataaacgttcaatgttgaacatcatatctaccttcaacattatgatcatgtggca |
748 |
Q |
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| T |
26841233 |
atatgaaagtattagaacttacagacatgtaggtgaggaaaccgtataaacgttcaatgttgaacgtcatatctaccttcaacaacatgatcatgtggca |
26841332 |
T |
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| Q |
749 |
gatgcccctgaacacttccaatcttgctccttagcaacttcttttgtggcaagtagtctaaagttggacgagtatgtgttctaaat |
834 |
Q |
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| T |
26841333 |
gatgcccctgaacacttccaatcttgctccttagcaacttcttttgtggcaagtagtctgaagttggacgagtatgtgttctaaat |
26841418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 26840066 - 26840189
Alignment:
| Q |
10 |
agcagagatagagaaggggttcattattctcatccttcgtgcaggaaggatagttggttcggtggcgggagagaggtctctacttacccttgcgtatccg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26840066 |
agcagagatagagaaggggttcattattctcatccttcgtgcaggaaggatagttggttcggtggcgggagagaggtctctactgacccttgcgtatccg |
26840165 |
T |
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| Q |
110 |
aatcccaaccatacaataaaactc |
133 |
Q |
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| T |
26840166 |
aatcccaaccatacaataaaactc |
26840189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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