View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_high_20 (Length: 405)
Name: NF3117_high_20
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 4523747 - 4523965
Alignment:
| Q |
19 |
ttacttgggtgcaattgttgctgagtgccaaaatattatgaacatttttattannnnnnn-atgtttgaagagaagctaatcaagctgctcactatttta |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4523747 |
ttacttaggtgcaattgttgctgagtgccaaaatattatgaacaattttattatttttttcatgttagaagagaagctaatcaagctgctcactattttg |
4523846 |
T |
|
| Q |
118 |
caaaatatgcaannnnnnnnnnnnnnngttgttgtttggattgaataaacacctttttgtatttgatgcactttgtagccttcgatttaatgtcaacacc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4523847 |
caaaatatgcaatttttattttttt--gttgttgtttggattgaataaacacctttttgtatttgatgcac-ttgtagccttcgatttaat-tcaacacc |
4523942 |
T |
|
| Q |
218 |
agatgtatgaatataagttttct |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4523943 |
agatgtatgaatataagttttct |
4523965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 4524030 - 4524119
Alignment:
| Q |
305 |
caacacttaatttctgatctcgacactttgaacaata---ataataataatttggtcaaagataatgataatcaatgtaaatgttttttc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4524030 |
caacacttaatttctgatctcgacactttgaacaataataataataataatttggtcaaaaataatgataatcaatgtaaatgttttttc |
4524119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 19119751 - 19119715
Alignment:
| Q |
79 |
atgtttgaagagaagctaatcaagctgctcactattt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19119751 |
atgtttgaagagaagctaatcaagctggccactattt |
19119715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 20781970 - 20782006
Alignment:
| Q |
79 |
atgtttgaagagaagctaatcaagctgctcactattt |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20781970 |
atgttagaagagaagctaatcaagctgctcattattt |
20782006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University