View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_high_28 (Length: 369)

Name: NF3117_high_28
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_high_28
NF3117_high_28
[»] chr7 (3 HSPs)
chr7 (19-361)||(39954595-39954937)
chr7 (19-118)||(10575477-10575576)
chr7 (19-71)||(354495-354547)
[»] chr3 (7 HSPs)
chr3 (17-118)||(24982134-24982235)
chr3 (25-118)||(31825550-31825643)
chr3 (17-110)||(25085126-25085219)
chr3 (17-110)||(24497260-24497353)
chr3 (25-118)||(24919879-24919972)
chr3 (19-95)||(21584613-21584689)
chr3 (25-104)||(24923467-24923546)
[»] chr4 (3 HSPs)
chr4 (49-119)||(53328834-53328904)
chr4 (22-95)||(22898646-22898719)
chr4 (22-95)||(22950314-22950387)
[»] chr2 (1 HSPs)
chr2 (19-101)||(41027662-41027744)
[»] chr5 (1 HSPs)
chr5 (22-119)||(26358540-26358637)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 39954937 - 39954595
Alignment:
Q  19 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954937 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T
Q  119 aaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctggttgaatgcttagttctgtggttct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39954837 aaatttagggtttagtttgttctggtcgatttagttctaaatctggttaatataaatttagtagtcttagatctggttgaatgcttagtcctgtggttct 39954738  T
Q  219 agtatttggacttgtatcttaattcttaacgatgaatgaatgaattttgtctttgctgaaattactttgaacctagcacatttgcttttacttttaattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954737 agtatttggacttgtatcttaattcttaacgatgaatgaatgaattttgtctttgctgaaattactttgaacctagcacatttgcttttacttttaattt 39954638  T
Q  319 tgtgagaatataatctgtttgaattttacatttgtttcatctc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39954637 tgtgagaatataatctgtttgaattttacatttgtttcatctc 39954595  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 10575477 - 10575576
Alignment:
Q  19 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 118  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| || || || ||||| || ||||| || ||||| |||||||||||||    
T  10575477 gttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggtt 10575576  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 354495 - 354547
Alignment:
Q  19 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 71  Q
    |||||||||||||||||||| |||||||| ||| | || || |||||||||||    
T  354495 gttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 24982134 - 24982235
Alignment:
Q  17 cagttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtgg 116  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||||||    
T  24982134 cagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtgg 24982233  T
Q  117 tt 118  Q
    ||    
T  24982234 tt 24982235  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 31825643 - 31825550
Alignment:
Q  25 tacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 118  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| |||||| | |||||||||||||| || ||||| || ||||| ||||    
T  31825643 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggtt 31825550  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 25085126 - 25085219
Alignment:
Q  17 cagttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggttt 110  Q
    ||||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| |||||||| || ||||| |||||    
T  25085126 cagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttt 25085219  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 24497353 - 24497260
Alignment:
Q  17 cagttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggttt 110  Q
    ||||||| ||||||||||| || |||||||| ||||| || |||||||||||||| |||||| | ||||| || ||||| || ||||| |||||    
T  24497353 cagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttt 24497260  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 24919972 - 24919879
Alignment:
Q  25 tacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 118  Q
    ||||||||||| ||||||||||| || || || ||||||||||| || |||||| | |||||||||||||| || ||||| || ||||| ||||    
T  24919972 tacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggtt 24919879  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 21584689 - 21584613
Alignment:
Q  19 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 95  Q
    ||||| |||||||||||||| |||||||| ||||| || || ||||||||||| |||||| | |||||||| |||||    
T  21584689 gttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 24923546 - 24923467
Alignment:
Q  25 tacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctcta 104  Q
    ||||||||||| || |||||||| || || || |||||||||||||| |||||| | ||||| |||||||| || |||||    
T  24923546 tacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctcta 24923467  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 53328834 - 53328904
Alignment:
Q  49 actgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtta 119  Q
    |||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||    
T  53328834 actgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtta 53328904  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 22898646 - 22898719
Alignment:
Q  22 acttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 95  Q
    |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22898646 acttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 22950314 - 22950387
Alignment:
Q  22 acttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 95  Q
    |||||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |||||||| ||||||||    
T  22950314 acttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 41027662 - 41027744
Alignment:
Q  19 gttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactct 101  Q
    ||||||||||| ||||| |||||||| || |||||||| || ||||||||||| |||||  | ||||| || |||||||||||    
T  41027662 gttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggactct 41027744  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 26358637 - 26358540
Alignment:
Q  22 acttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtta 119  Q
    ||||||||||| |||||| |  | ||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||| || || ||||| || |||||    
T  26358637 acttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggtta 26358540  T

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