View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_high_3 (Length: 834)

Name: NF3117_high_3
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_high_3
NF3117_high_3
[»] chr1 (10 HSPs)
chr1 (5-568)||(2568977-2569543)
chr1 (640-820)||(2569616-2569795)
chr1 (68-240)||(29119324-29119495)
chr1 (68-238)||(32676136-32676305)
chr1 (68-217)||(8462129-8462276)
chr1 (68-165)||(8809715-8809811)
chr1 (68-162)||(25161309-25161402)
chr1 (149-240)||(46435465-46435556)
chr1 (68-129)||(46435563-46435624)
chr1 (69-102)||(16679835-16679868)
[»] chr7 (6 HSPs)
chr7 (68-225)||(35341536-35341692)
chr7 (68-240)||(48250154-48250327)
chr7 (92-240)||(32694570-32694717)
chr7 (67-240)||(31306868-31307046)
chr7 (173-240)||(48072491-48072558)
chr7 (173-224)||(40856949-40857000)
[»] chr5 (13 HSPs)
chr5 (73-240)||(33858538-33858704)
chr5 (68-240)||(11607534-11607705)
chr5 (68-240)||(19357262-19357432)
chr5 (84-240)||(33271630-33271785)
chr5 (68-236)||(1826259-1826426)
chr5 (68-165)||(38010689-38010785)
chr5 (68-204)||(39570079-39570214)
chr5 (68-165)||(13015381-13015477)
chr5 (68-165)||(29989962-29990058)
chr5 (68-139)||(13086753-13086824)
chr5 (68-165)||(9827788-9827884)
chr5 (68-165)||(13478120-13478216)
chr5 (123-217)||(42148201-42148294)
[»] chr2 (11 HSPs)
chr2 (68-240)||(34392081-34392252)
chr2 (82-240)||(23863803-23863958)
chr2 (71-224)||(7381695-7381846)
chr2 (68-240)||(37357917-37358092)
chr2 (118-236)||(4779635-4779752)
chr2 (68-165)||(21603959-21604055)
chr2 (68-233)||(4775634-4775799)
chr2 (179-240)||(21606149-21606210)
chr2 (119-240)||(25275622-25275741)
chr2 (69-116)||(34904304-34904351)
chr2 (3-32)||(35022728-35022757)
[»] chr3 (17 HSPs)
chr3 (81-240)||(37742738-37742896)
chr3 (68-236)||(44380254-44380421)
chr3 (72-243)||(33509684-33509854)
chr3 (68-215)||(47426350-47426496)
chr3 (69-165)||(50934501-50934596)
chr3 (68-165)||(47186175-47186271)
chr3 (70-136)||(32319468-32319534)
chr3 (68-165)||(31187145-31187241)
chr3 (68-134)||(10179868-10179934)
chr3 (68-165)||(42664673-42664769)
chr3 (76-238)||(35094554-35094717)
chr3 (68-134)||(10018671-10018737)
chr3 (68-165)||(34029366-34029462)
chr3 (70-139)||(39498769-39498838)
chr3 (68-134)||(10123211-10123277)
chr3 (188-240)||(19619217-19619269)
chr3 (91-233)||(17466296-17466437)
[»] chr4 (16 HSPs)
chr4 (68-240)||(12473704-12473875)
chr4 (68-240)||(12528113-12528284)
chr4 (68-236)||(35869575-35869742)
chr4 (68-236)||(51811914-51812081)
chr4 (68-225)||(21260794-21260950)
chr4 (68-232)||(22343337-22343500)
chr4 (69-220)||(33249394-33249544)
chr4 (68-240)||(55590482-55590642)
chr4 (69-163)||(52910126-52910219)
chr4 (68-165)||(52012778-52012874)
chr4 (69-140)||(34829182-34829253)
chr4 (72-127)||(49998486-49998541)
chr4 (68-165)||(9799438-9799534)
chr4 (69-165)||(49999663-49999758)
chr4 (173-236)||(1796654-1796717)
chr4 (181-236)||(35781021-35781076)
[»] chr8 (7 HSPs)
chr8 (68-236)||(41179567-41179734)
chr8 (68-240)||(24337830-24338001)
chr8 (68-240)||(11254028-11254198)
chr8 (76-214)||(4708333-4708470)
chr8 (75-165)||(18168392-18168481)
chr8 (75-165)||(18631949-18632038)
chr8 (68-165)||(1514803-1514899)
[»] chr6 (7 HSPs)
chr6 (69-236)||(1211848-1212014)
chr6 (68-240)||(5403876-5404047)
chr6 (68-240)||(32644838-32645007)
chr6 (68-133)||(11753167-11753232)
chr6 (68-165)||(34245567-34245663)
chr6 (196-240)||(10503259-10503303)
chr6 (69-140)||(11113557-11113628)
[»] scaffold0519 (1 HSPs)
scaffold0519 (68-240)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (69-240)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (68-240)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (69-165)||(23174-23263)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 5 - 568
Target Start/End: Original strand, 2568977 - 2569543
Alignment:
Q  5 cactcgttaacattttccttattttaataacatttttgagcatgttgtagatgattattaagcccacttgtgtaccattaaggtaccaatgatatatatc 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||| ||||||||    
T  2568977 cactcgttaacatttcccttattttaataacatttttgagcatgttgtagat---tattgagcccacttgtgtaccattaaggtaccaatggtatatatc 2569073  T
Q  105 atttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattgg 204  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||| |||||||||||| |    
T  2569074 atttgccaattagagtgtgccacctaccaatgttacattaccaa-tgctttatttgatatatttttt-aaagggtgtgccatgtggcacattctaattag 2569171  T
Q  205 acaatggtatatatcattatgttacacaagtgctatttgtcagcgtactttggatgttggaac----------gtctttgcatgctcttgcttgactcat 294  Q
     |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||          |||||||||||||||||||| ||||||    
T  2569172 gcaatagtatatatcattatgttacacaagtgctatccgtcagcgtactttggatgttggaacttaatttgatgtctttgcatgctcttgcttcactcat 2569271  T
Q  295 nnnnnnnntaatattggtatttatataaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacact--ggtttccaattatatt 392  Q
             |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2569272 aaaaaaaaaaatagtggtatttatagaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacactatggtttccaattatatt 2569371  T
Q  393 acatgatgttatcataaaggaatctcctagagagtttctttaaaataaaaaatctccttgagagttggtcactataattaacttttacaatttattgtac 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569372 acatgatgttatcataaaggaatctcctagagagtttctttaaaagaaaaaatctccttgagagttggtcactataattaacttttacaatttattgtac 2569471  T
Q  493 taatttgaattcactcttttatatttgtgcatatttcttaacaaactccaaaaagacataatgaatatttgcactg 568  Q
    |||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2569472 taatt---attcactcttttatatttgtgcat-tttcttaacaaactccaaaaagacataatgaatatttgcactg 2569543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 640 - 820
Target Start/End: Original strand, 2569616 - 2569795
Alignment:
Q  640 aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg 739  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  2569616 aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg 2569714  T
Q  740 tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt 820  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2569715 tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt 2569795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 29119495 - 29119324
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||| || |||||| |||  | |||||||||||||||||      
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttacttta-tagatgctttatttgatatatt 29119397  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||||||  || |||||||||||||| |||| ||||||| | ||||| ||||||| ||||||    
T  29119396 tttttaaagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 32676136 - 32676305
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||| | ||  ||||||||||||||||| |||  |||||||||||||||||||      
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttacttta-taaatgctttatttgatatatt 32676234  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 238  Q
         ||||  |||||||  || |||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  32676235 tttttaaagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 8462129 - 8462276
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||  ||||| ||||||||| |||||||||||   |||||| ||||||||||||||||||||||  |||  ||||| ||||||| |||||      
T  8462129 ccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttatttta-taaatgttttatttaatatact 8462226  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 217  Q
         |||||| |||||| |||||||||| ||||||||||||||||||||    
T  8462227 tttttaaagggcgtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 8809811 - 8809715
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttacttta-taaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgat 162  Q
    |||||||||||||||||| ||  ||||| |||||| ||||  ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttacttta-taaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 46435556 - 46435465
Alignment:
Q  149 atgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    |||||||||||||||||       |||||||||| ||  ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  46435556 atgctttatttgatatatatttttaaagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctat 46435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 46435624 - 46435563
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacct 129  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||||| |||| | |||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct 46435563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 16679868 - 16679835
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatata 102  Q
    ||||||||||||||||||||||||||| ||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatata 16679835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 8e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 35341536 - 35341692
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttacttta-taaatgttttatttgatatact 35341634  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 225  Q
         ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  35341635 tttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatg 35341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 48250154 - 48250327
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||  | ||||||||||||||||       
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatttt 48250252  T
Q  168 nnnnnaaagggtgtgc--catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||||| |||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  48250253 tttttaaagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctat 48250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 240
Target Start/End: Complemental strand, 32694717 - 32694570
Alignment:
Q  92 aatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgac 191  Q
    ||||||||||| |||| |  ||||| ||||| ||| ||| ||||||||| |||  |||| ||||||||||||||       ||||||||||||| |||||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttat-aaattctttatttgatatatttttttaaagggtgtgccacgtgac 32694619  T
Q  192 acattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||||||||| | |||||||||||| ||||||  ||||||||||||||    
T  32694618 acattctaattaggcaatggtatataccattatagtacacaagtgctat 32694570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 31307046 - 31306868
Alignment:
Q  67 cccacttgtgtaccattaaggtaccaatgatatatatcatttgccaa-ttacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||| |||||||||||||| ||| |||||||||||||||||  |||| ||| ||||||| ||||||||||||||| |||  ||||||||||||||||  |    
T  31307046 cccatttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttacttta-taaatgctttatttgatgaa 31306948  T
Q  166 nnnnnnnaa-----agggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
           ||     ||| |||| ||||||  ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  31306947 aataaataaattataggatgtgtcatgtggtacattctaattggacaatgatatatatcattatggtacacaaatgctat 31306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 48072491 - 48072558
Alignment:
Q  173 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  48072491 aaagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctat 48072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  173 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 224  Q
    |||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 33858704 - 33858538
Alignment:
Q  73 tgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnn 172  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||||||| |||  ||||| |||||||||||||           
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttat-aaatgttttatttgatatactttttt 33858606  T
Q  173 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  33858605 aaagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctat 33858538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 11607705 - 11607534
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||| |||| |||  ||||| |||||||||||||      
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttat-aaatgttttatttgatatact 11607607  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11607606 tttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctat 11607534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 19357432 - 19357262
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||||||||| |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattacttta-taaatgctttatttgatata-t 19357335  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||| ||| ||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  19357334 tttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctat 19357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 33271630 - 33271785
Alignment:
Q  84 aaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgc 183  Q
    |||||||||||||||||||||||| |||||||| |||||| || ||| ||||||||| ||   |||||||||||||||||||       ||||| || ||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttac-ttgataaatgctttatttgatatatttttttaaaggatgcgc 33271728  T
Q  184 catgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    || ||| |||||||||||||| |||| ||||||| ||||||| |||| |||||||||    
T  33271729 cacgtggcacattctaattgggcaatagtatataccattatggtacataagtgctat 33271785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 1826259 - 1826426
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||| ||||||||||| |||| ||   | |||||||||||||||||      
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattac-tttgtagatgctttatttgatatatt 1826357  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
         ||||  |||||||  || |||||| |||||| |||||| |||||||||||||| ||||||||||    
T  1826358 tttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 38010785 - 38010689
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 38010689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 39570214 - 39570079
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||| |||||| ||| ||||| |||||| |||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatact 39570116  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattgg 204  Q
         |||||||||||||  ||||| |||||||||||    
T  39570115 tttttaaagggtgtgccacctgacatattctaattgg 39570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 13015381 - 13015477
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||  |||||||||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 29989962 - 29990058
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||| ||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 13086753 - 13086824
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 139  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgtta 13086824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 9827788 - 9827884
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| | || | |||||| ||||| |||||||||||| |||| |||  ||||  |||||||||||||    
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattacttta-taaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 13478216 - 13478120
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||| ||||||| |||||| ||||  ||||| | |||||||||| ||||| |||||| |||  ||||  |||||||||||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttacttta-taaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 42148201 - 42148294
Alignment:
Q  123 gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 217  Q
    |||||||||||||||||| |||  ||||| |||||||||||||       ||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  42148201 gccacctaccaatgttactttat-aaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatata 42148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 34392252 - 34392081
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||||      
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttacttta-taaatgctttatttgatatatt 34392154  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||||||  || |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  34392153 tttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctat 34392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 23863958 - 23863803
Alignment:
Q  82 ttaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgt 181  Q
    |||||||||||||| |||||   ||| | |||||| ||||||||||||||||||||||| |||  |||||||||||||||||||       |||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttat-aaatgctttatttgatatatatttttaaagggtgt 23863862  T
Q  182 gccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||  || |||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  23863861 gccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctat 23863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 7381695 - 7381846
Alignment:
Q  71 cttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnn 170  Q
    ||||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||| ||||||||||||| |||  |||| ||||||||||||||         
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttacttta-taaattctttatttgatata-tttt 7381792  T
Q  171 nnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattat 224  Q
      ||||| |||| ||||||||||||| ||||||| |||| ||||||| ||||||    
T  7381793 ttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattat 7381846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 37358092 - 37357917
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||| ||||||||||||||||||||||| ||||  | ||||| |||||| |||||| ||||||||| |||  ||||||||||||| ||||       
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttat-aaatgctttatttaatatttt 37357994  T
Q  168 nnnnn----aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
             |||   ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  37357993 tttttttttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctat 37357917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 4779635 - 4779752
Alignment:
Q  118 agtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatata 217  Q
    |||||||| |||| ||||||||| |||  |||| ||||||||||||||       ||||| |||| || |||||||||||||||||||||||||||||||    
T  4779635 agtgtgccgcctaacaatgttactttat-aaatactttatttgatatatttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatata 4779733  T
Q  218 tcattatgttacacaagtg 236  Q
     ||||||| ||||||||||    
T  4779734 ccattatgatacacaagtg 4779752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||  |||||||||||||||| |||  ||||| |||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttacttta-taaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 4775634 - 4775799
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||||| | |||  || |||||||| |||| |||  || || ||||||| |||||      
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaa 233  Q
         ||||| |||||||  || |||| | |||||||||||||||||||| ||||||| |||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaa 4775799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 21606149 - 21606210
Alignment:
Q  179 tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctat 21606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 25275741 - 25275622
Alignment:
Q  119 gtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatat 218  Q
    |||||||||||| ||||||||| ||   |||| ||||||||||||||       ||||| ||||||| |||| ||||||||||||||||||| ||||||     
T  25275741 gtgtgccacctatcaatgttactttt--aaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattggacaatgatatatac 25275644  T
Q  219 cattatgttacacaagtgctat 240  Q
    ||||||| |||| |||||||||    
T  25275643 cattatgatacagaagtgctat 25275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 34904351 - 34904304
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaatta 116  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  34904351 cacttttgtatcattaaggtaccaatgttatatatcatttgctaatta 34904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 35022728 - 35022757
Alignment:
Q  3 gacactcgttaacattttccttattttaat 32  Q
    ||||||||||||||||||||||||||||||    
T  35022728 gacactcgttaacattttccttattttaat 35022757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 37742738 - 37742896
Alignment:
Q  81 attaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtg 180  Q
    ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||       |||| |||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattacc-aatgctttatttgatatatttttttaaagagtg 37742836  T
Q  181 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  37742837 tgccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctat 37742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 44380254 - 44380421
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| |||||| |||| |||| |||  |||||||||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttat-aaatgctttatttgatatact 44380352  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44380353 tttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtg 44380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 33509684 - 33509854
Alignment:
Q  72 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnn 171  Q
    ||||||||||||||||||| |||  |||||||||||  ||||||| |||||||||||||||||| |||| |||  | |||||||||||||| ||          
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattacttta-tagatgctttatttgatgtatttttt 33509782  T
Q  172 naaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctatttg 243  Q
     ||||| |||||||  || |||||||||||| ||||||| |||||| ||||||  |||||||||||||||||    
T  33509783 taaaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctatttg 33509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 47426350 - 47426496
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||  |||||| |||| |||||||| |||||| |||||| ||||||||| |||  | |||||||||||||||||      
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttacttta-tagatgctttatttgatatatt 47426448  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtata 215  Q
         |||||||||||||  ||  ||||||||||||| ||||||||||    
T  47426449 tttttaaagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 50934501 - 50934596
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||| |||  |||||| ||||||||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttacttta-taaatgcattatttgatata 50934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 47186175 - 47186271
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttacttta-taaatactttatttgatata 47186271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 32319534 - 32319468
Alignment:
Q  70 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatg 136  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||| ||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 31187241 - 31187145
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||| ||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttacttta-taaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 10179934 - 10179868
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 134  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||||| |||||||||||||||||    
T  10179934 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 42664673 - 42664769
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||| | |||||| ||||  ||||| | |||||||||| |||||||||||  |||  ||||| |||||||||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttatttta-taaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  76 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgt--gccacctaccaatgttacattaccaaatgctttatttgatatannnnnnna 173  Q
    |||||||||| |||||| || |||||| ||||  | ||||| || ||  |||||||||||||||||| |||  ||||  |||||||||||||       |    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttat-aaatattttatttgatatattttttta 35094652  T
Q  174 aagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgct 238  Q
    |||| |||| || |||||||||||||||||||||||| || ||| ||||||| ||||||| ||||    
T  35094653 aaggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 10018737 - 10018671
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 134  Q
    |||||||||||||||||| ||||||||| |||||| |||| | |||| | |||||||||||||||||    
T  10018737 ccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 34029462 - 34029366
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||| ||||||||||||||||||| |||||| ||||   |||| | |||||||||| ||| |||||||| |||  ||||| |||||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttacttta-taaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 39498838 - 39498769
Alignment:
Q  70 acttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgtta 139  Q
    |||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |||||| | ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgtta 39498769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 10123277 - 10123211
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaa 134  Q
    |||||||||||||||||| ||| ||||| ||||||||| | | |||| | |||||||||||||||||    
T  10123277 ccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 19619217 - 19619269
Alignment:
Q  188 tgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||    
T  19619217 tgacacattttaattgggcaatggtatataccattatggtacacatgtgctat 19619269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 17466296 - 17466437
Alignment:
Q  91 caatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaagggtgtgccatgtga 190  Q
    ||||| ||||||||||| | |||||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||       ||||||| ||||| ||      
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttacttta-taaatgatttagttgatatatttttttaaagggtatgccacgtac 17466394  T
Q  191 cacattctaattggacaatggtatatatcattatgttacacaa 233  Q
    |||| ||||| ||  |||||||||||| ||||| | |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaa 17466437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 12473704 - 12473875
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12473802  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12473803 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12473875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 12528113 - 12528284
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||  | |||||||||||||||||      
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-tagatgctttatttgatatatt 12528211  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||| ||  ||||||||||||||||  |||||||||||| ||||||| ||||||||||||||    
T  12528212 tttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctat 12528284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 35869742 - 35869575
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||  ||  ||||| |||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactata-taaatgttttatttgatatact 35869644  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
         ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || |||||||    
T  35869643 tttttaaagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 51811914 - 51812081
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||| |||||||||||||||| ||| ||||||||| ||| |||||||| ||| ||||||||||||||||||| |||  ||||  ||| |||||||||      
T  51811914 ccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttat-aaattttttttttgatatatt 51812012  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
         ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  51812013 tttttaaagggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtg 51812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 21260794 - 21260950
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||      
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatt 21260892  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatg 225  Q
         |||||||||||||  || ||||||||||||||  |||| |||||| |||||||    
T  21260893 tttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 22343337 - 22343500
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||| |||||| || ||| ||||||||| |||  |||||||||||||||||||      
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttacttta-taaatgctttatttgatatatt 22343435  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacaca 232  Q
         ||||| |||||||  |||||||||||||||| |||||| |||||| ||||||| ||||||    
T  22343436 attttaaaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacaca 22343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 33249544 - 33249394
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 168  Q
    |||||||||||||||||||||| |||| ||||||  ||| |||||||| |||||| |||||||||||||||| |||  |||||||||||||||||||       
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttacttta-taaatgctttatttgatatatat 33249446  T
Q  169 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatca 220  Q
        |||||||||||||  || |||| ||||||||  ||||| |||||||||    
T  33249445 ttttaaagggtgtgccacatggcacaatctaattgagcaatgatatatatca 33249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 55590482 - 55590642
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||| |||||||||||||||            ||||||||||||||      
T  55590482 ccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta------------ctttatttgatatact 55590569  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||| ||||||| |||||||||||||||||| |||||| ||||| ||||||| ||| ||||||||||    
T  55590570 tttttaaaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctat 55590642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgata 163  Q
    |||||||||||||| | |||||||||| |||||| |||| |||||||| |||||||||||||||||| |||| |||  |||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattacttta-taaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 52012778 - 52012874
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  ||||| |||||||||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttacttta-taaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 34829253 - 34829182
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 140  Q
    ||||| ||||| ||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttac 34829182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  72 ttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccac 127  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 9799534 - 9799438
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||| ||||||||||||||||||| |||||| ||||  ||||  | | |||||||| |||||||||||| |||  ||||| ||||||| |||||    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttacttta-taaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 49999758 - 49999663
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||| ||| ||| |||| ||| | ||||| | |||||| |||||| ||| |||||||||||  |||  |||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttatttta-taaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 1796654 - 1796717
Alignment:
Q  173 aaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
    ||||| |||| || ||| |||| | |||||||||||||||||||| ||||||| ||||||||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtg 1796717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 35781021 - 35781076
Alignment:
Q  181 tgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtg 35781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||| |||  ||||| ||||||| |||||      
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttacttta-taaatgttttatttaatatatt 41179636  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
         || || |||||||  || |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  41179635 tttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 24338001 - 24337830
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||| ||||||||| ||||| |||||| |||  | |||||| ||||||||| ||||||||||||| |||  | |||||||||||||||||      
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttat-agatgctttatttgatatata 24337903  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||||||  |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  24337902 tttttaaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctat 24337830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 11254198 - 11254028
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11254198 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11254101  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11254100 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11254028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 4708470 - 4708333
Alignment:
Q  76 gtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannnnnnnaaa 175  Q
    |||||| |||||||||||||  |||||||||  |||||||| |||||| |||||||||||||||| |||  ||||| |||||||||||||       |||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttacttta-taaatgttttatttgatatatatttttaaa 4708372  T
Q  176 gggtgtgccatgtgacacattctaattggacaatggtat 214  Q
    |||||||||| ||| |||||||||||| | |||||||||    
T  4708371 gggtgtgccacgtggcacattctaattaggcaatggtat 4708333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  75 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  75 tgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    ||||||||||||||||||||| |||||||||||   |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttacttta-taaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 1514803 - 1514899
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    |||||||||||||||||||||||||||| |||||| ||||   |||| | ||||| |||| |||||||||||| |||  ||||| |||||||||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttacttta-taaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 168  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| | | ||||||||||||||||       
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcga-tgctttatttgatatattt 1211916  T
Q  169 nnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtg 236  Q
        ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||    
T  1211915 ttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 5404047 - 5403876
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||||||||||||||| |||| ||||||| ||| | || ||| ||| ||||||||||||||||||| |||  | ||| |||||||||||||      
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttat-agatgttttatttgatatatt 5403949  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||| ||  ||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5403948 tttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctat 5403876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 32645007 - 32644838
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||| |||||||||||||| || | ||  ||||||||||| ||||||||  ||||| ||||||| |||||||| |||  |||| ||||||||| ||||      
T  32645007 ccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta--aaatactttatttgttatatt 32644910  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||||||  ||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  32644909 tttttaaagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctat 32644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctacca 133  Q
    |||||||||||||||||||||||||||| |||||| |||  |||||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 34245567 - 34245663
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    ||||||||||||||||||||||  |||| |||||| ||||  ||||| | |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttacttta-taaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 10503303 - 10503259
Alignment:
Q  196 tctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  10503303 tctaattggacaatggtatataccattatggtacacaagtgctat 10503259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 11113557 - 11113628
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttac 140  Q
    ||||||||||||||||||||||||||| |||||| ||||  | ||| | |||||| ||| ||| ||||||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttac 11113628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 11195 - 11365
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||| |||  ||||| |||||||||||||      
T  11195 ccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttat-aaatgttttatttgatataca 11292  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         ||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| ||||||    
T  11293 tttttaaagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctat 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 13176 - 13005
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatannn 168  Q
    ||||||||||||||||||||||||||| |||||| |||| || |||||  |||||||||||  ||||||||| ||| |  |||||||||||||||||       
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatc-gatgctttatttgatatattt 13078  T
Q  169 nnnnaaaggg-tgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
        |||||| ||||||| ||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||    
T  13077 ttttaaagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctat 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 34194 - 34363
Alignment:
Q  68 ccacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatatann 167  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||| |||| |||  ||||  |||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattacttta-taaatattttatttgatata-t 34291  T
Q  168 nnnnnaaagggtgtgccatgtgacacattctaattggacaatggtatatatcattatgttacacaagtgctat 240  Q
         |||||||||| || ||||||||||||||||||| |||| |||||| | ||||| ||||||| ||||||    
T  34292 tttttaaagggtgtgtcacgtgacacattctaattggataatgttatata-ccttatggtacacaaatgctat 34363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 23263 - 23174
Alignment:
Q  69 cacttgtgtaccattaaggtaccaatgatatatatcatttgccaattacagtgtgccacctaccaatgttacattaccaaatgctttatttgatata 165  Q
    ||||||||||||||||||||||       |||||||||| |||||||| |||||||||||||||||| |||| |||  ||||  |||||||||||||    
T  23263 cacttgtgtaccattaaggtac------gatatatcattggccaattagagtgtgccacctaccaattttacttta-taaatattttatttgatata 23174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University