View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_high_31 (Length: 351)

Name: NF3117_high_31
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_high_31
NF3117_high_31
[»] chr2 (5 HSPs)
chr2 (86-275)||(1233580-1233770)
chr2 (87-143)||(35029861-35029917)
chr2 (87-143)||(34229074-34229130)
chr2 (1-40)||(1233816-1233855)
chr2 (87-143)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (86-143)||(40809592-40809649)
chr3 (86-143)||(40810284-40810341)
chr3 (87-143)||(35903702-35903758)
chr3 (86-143)||(8922897-8922954)
chr3 (86-143)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (87-142)||(44516799-44516854)
chr4 (87-143)||(32159521-32159577)
chr4 (87-143)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (94-143)||(8814483-8814532)
chr8 (92-149)||(17943018-17943075)
chr8 (86-143)||(42578722-42578779)
chr8 (87-139)||(11519367-11519419)
chr8 (87-143)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (92-132)||(34260140-34260180)
chr6 (92-132)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (92-128)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (87-143)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 86 - 275
Target Start/End: Complemental strand, 1233770 - 1233580
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggagaaaaatagaccggtaaattggaggggggattaaaatgtgata 185  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233770 gccacgtgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagaaaaatagactggtaaattggaggggggattaaaatgtgata 1233671  T
Q  186 ggtaaattgtacc-nnnnnnnngtaattgaaatactaaaggtattcaccaactatatcaaattgaactcttattttccacctttaggtaga 275  Q
    |||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1233670 ggtaaattgtaccaaaaaaaaagtaattgaaatactaaaggtattcaccaactatatcaaattgaactcttattttccatctttaggtaga 1233580  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 35029861 - 35029917
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  35029861 ccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggag 35029917  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 34229074 - 34229130
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||| | |||||||||    
T  34229074 ccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggag 34229130  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1233855 - 1233816
Alignment:
Q  1 ggagactggtgtgttgtttcagatacaagagaagaactag 40  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  1233855 ggagactggtgtgttgcttcggatacaagagaagaactag 1233816  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 34228216 - 34228160
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||| || |||| ||||| |||||||||||||| | |||||||||    
T  34228216 ccacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggag 34228160  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 40809649 - 40809592
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||    
T  40809649 gccacgtgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggag 40809592  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 40810284 - 40810341
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| |||||||||||||||||||| ||||| | |||||||||||||| |||||||||    
T  40810284 gccatgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggag 40810341  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 35903758 - 35903702
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| |||||||||||||| |||| ||||| |||||||||||  |||||||||||||    
T  35903758 ccacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggag 35903702  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 8922954 - 8922897
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    ||||| ||||||||||||||||    ||||| ||||||||||| ||||||||||||||    
T  8922954 gccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggag 8922897  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 41325892 - 41325835
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    ||||| ||||||||||||||||    ||||| ||||||||||| ||||||||||||||    
T  41325892 gccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggag 41325835  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 44516854 - 44516799
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatgga 142  Q
    |||| ||||||||||| || |||| |||||||||||||| ||||||||||||||||    
T  44516854 ccacatgtcacacatctatcacttaaaatgaggtaaattaaggaaacctaaatgga 44516799  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 32159521 - 32159577
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||||| |   | ||||| ||||||||||||||||||||||||||    
T  32159521 ccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggag 32159577  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 39311371 - 39311427
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||| ||||||| ||||| ||||||||||| || | |||||||||    
T  39311371 ccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggag 39311427  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 8814483 - 8814532
Alignment:
Q  94 tcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggag 8814532  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 17943018 - 17943075
Alignment:
Q  92 tgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggagaaaaat 149  Q
    ||||||||||||||| ||||||||| ||||||||||| |||   |||||||| |||||    
T  17943018 tgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaaat 17943075  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 42578779 - 42578722
Alignment:
Q  86 gccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    ||||| ||||| ||||| ||||||| ||||| ||||||||||| |||| |||||||||    
T  42578779 gccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggag 42578722  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 11519419 - 11519367
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaat 139  Q
    |||| ||||||||||| |||| || ||||| |||||||||| |||||||||||    
T  11519419 ccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaat 11519367  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 38444464 - 38444520
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||||||||||| || |||| ||||  ||||||||||||||| ||||||||||    
T  38444464 ccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggag 38444520  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 34260180 - 34260140
Alignment:
Q  92 tgtcacacatccatgacttcaaatgaggtaaattgaggaaa 132  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  34260180 tgtcacacatccatgacttgaaatggggtaaattgaggaaa 34260140  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 34262190 - 34262230
Alignment:
Q  92 tgtcacacatccatgacttcaaatgaggtaaattgaggaaa 132  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  34262190 tgtcacacatccataacttaaaatggggtaaattgaggaaa 34262230  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 10920 - 10884
Alignment:
Q  92 tgtcacacatccatgacttcaaatgaggtaaattgag 128  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10920 tgtcacacatccatgtcttcaaatggggtaaattgag 10884  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 7338798 - 7338854
Alignment:
Q  87 ccacgtgtcacacatccatgacttcaaatgaggtaaattgaggaaacctaaatggag 143  Q
    |||| ||| ||||||| ||||||| |||||  ||||||||||||||| |||||||||    
T  7338798 ccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggag 7338854  T

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