View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_high_33 (Length: 340)
Name: NF3117_high_33
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 40977025 - 40977348
Alignment:
| Q |
1 |
acaaaaaggacagatgtgtcagcaatgatggctaaatcttcatggattttcacgagaaggcaaacatgcacaactaagacagaccatctcatttccgaac |
100 |
Q |
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| T |
40977025 |
acaaaaaggacagatgtgtcagcaatgatggctaaatcttcatggattttcacgaaaaggcaaacatgcacaactaagacagaccatcttatttccgaac |
40977124 |
T |
|
| Q |
101 |
acctgcaccacgcttctctttacgcgtatctttctgaccaccttcacgcg------tccgaacacctgcatcacgtgtctcccaagagggcnnnnnnnca |
194 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |
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| T |
40977125 |
acctgcaccacgcttctctttacgcgtatttttctgaccaccttcacgcgtctctttctgaacacctacatcacgtgtctcccaagagggctttttttca |
40977224 |
T |
|
| Q |
195 |
ttagcaacgtcgttcttgatcagtgcttctatattcatgataaacaagaactgcagagaggaagaataagataaacaagaggaagaatctcctgacgttt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40977225 |
ttagcaacgtcgttcttgatcagtgcttctatattcatgataaacaagaactgcagagaggaagaataagataaacaagaggaagaatctcctgacgttt |
40977324 |
T |
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| Q |
295 |
ataaagagaaaacaagatatgcct |
318 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
40977325 |
ataaacagaaaacaagatatgcct |
40977348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34263497 - 34263169
Alignment:
| Q |
1 |
acaaaaaggacagatgtgtcagcaatgatggctaaatcttcatggattttcacgagaaggcaaacatgcacaactaagacagaccatctcatttccgaac |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||| |
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| T |
34263497 |
acaaaaaggacagatgtgtcagtaatgatggctaaagcttcaccgattttcacgagaaggcagacatgcacaactaatacagatcatcttatctccgaac |
34263398 |
T |
|
| Q |
101 |
acctgcaccacgcttctctttacgcgtatctttctgaccaccttcacgcg------tccgaacacctgcatcacgtgtctcccaagagggcnnnnnnnca |
194 |
Q |
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|| |||||||| ||||||||||| |||||||||||||| ||||||| | || ||||||| ||||||||||||||||||||||| || |
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| T |
34263397 |
tgctccaccacgcctctctttacgcatatctttctgaccaacttcacgtgtctctttcttaacacctacatcacgtgtctcccaagagggctttttttca |
34263298 |
T |
|
| Q |
195 |
ttagcaacgtcgttcttgatcagtgcttctata---ttcatgataaacaagaactgcagagaggaagaataagataaacaagagga--agaatctcctga |
289 |
Q |
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|||||||| ||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||| ||| ||||||| |
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| T |
34263297 |
ttagcaacatcgtttttgatcagtccttctataggcttcatgataagcaagaactgcagagaggaagaataaaataaacaaaaggaagagagtctcctgg |
34263198 |
T |
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| Q |
290 |
cgtttataaagagaaaacaagatatgcct |
318 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34263197 |
cgtttataaagagaaaacaagatatgcct |
34263169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 29132113 - 29132250
Alignment:
| Q |
1 |
acaaaaaggacagatgtgtcagcaatgatggctaaatcttcatggattttcacgagaaggcaaacatgcacaactaagacagaccatctcatttccgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29132113 |
acaaaaaggacagatgtgtcagcaaagatggctaaatcttcacgggttttcacgagaaggcaat--------------acagatcatctcatttccgaaa |
29132198 |
T |
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| Q |
101 |
acctgcaccacgcttctctttacgcgtatctttctgaccaccttcacgcgtc |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29132199 |
acctgcaccacgcttctctttacgcgtatctttctgaccaccttcacacgtc |
29132250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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