View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_high_41 (Length: 295)
Name: NF3117_high_41
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 32844534 - 32844266
Alignment:
| Q |
18 |
caatttgtatgaaattaatagtaacaatgttagattatgatcaatctggtggattgttaattgtttgaaagtggttctgtttctggttttcagctgaggt |
117 |
Q |
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| T |
32844534 |
caatttgtatgaaattaatagtaacaatgttagattatgatcaatctggtggattgttaattgtttgaaagtggttctgtttctggttttcagctgaggt |
32844435 |
T |
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| Q |
118 |
cctctttcatggattttaaaagcaacaaaaggaactcgtgtaattctgagatagctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844434 |
cctctttcatggattttaaaagcaacaaaaggaactcgtgtaattctgagatagctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaa |
32844335 |
T |
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| Q |
218 |
tgtatgtagaaatgtcgaatctaaccaccaaataaaagcacagttgcaaaagcaacttcagagtattat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844334 |
tgtatgtagaaatgtcgaatctaaccaccaaataaaagcacagttgcaaaagcaacttcagagtattat |
32844266 |
T |
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