View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_high_42 (Length: 287)
Name: NF3117_high_42
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 3925925 - 3925649
Alignment:
| Q |
11 |
cacagatagtgatagagagaaaccgagtgtaccaaattattctaagcctctctatttttggttttcttcaagaggtatgtttgttttccaaattcatctc |
110 |
Q |
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| T |
3925925 |
cacagatagtgatagagagaaaccgagtgtagcaaattattctaagcctctctatttttggttttcttcaagaggtatgtatgttttccaaattcatctc |
3925826 |
T |
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| Q |
111 |
tatattatttgtgtttatcaacattcatcgcggttttgcttttctaaaaattcatctaaacacatcctaatctataaacgtactgaaaatacatgttaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3925825 |
tatattatttgtgtttatcaacattcatcgcggttttgcttttctaaaaattcatctaaacacatcctaatctatgaacgtactgaaaatacatgttaat |
3925726 |
T |
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| Q |
211 |
cattgacacttttttaattttgttttatgcttgtatgtatgcagcgctatcctaggtgtgttagaatatttagtcat |
287 |
Q |
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| T |
3925725 |
cattgacacttttttaattttgtttgatgcttgtatgtatgcagcgctatcctaggtgtgttagaatatttagtcat |
3925649 |
T |
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