View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_high_60 (Length: 245)
Name: NF3117_high_60
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 39470809 - 39471043
Alignment:
| Q |
1 |
ggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaac |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39470809 |
ggatttagcgtagacatcagattctgcagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaac |
39470908 |
T |
|
| Q |
101 |
tctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgag |
200 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470909 |
tctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttggagcacaagacatacacttactcagtgtgag |
39471008 |
T |
|
| Q |
201 |
ttactgtttctctgaattgttctttgatatacctg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
39471009 |
ttactgtttctctgaattgttctttgatatacctg |
39471043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39464586 - 39464816
Alignment:
| Q |
1 |
ggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaac |
100 |
Q |
| |
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|||||||| ||||||||| ||||||| || ||||||| ||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||| || ||| |
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| T |
39464586 |
ggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaac |
39464685 |
T |
|
| Q |
101 |
tctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgag |
200 |
Q |
| |
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|| | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |||||| ||||| ||||||||| || |||| |
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| T |
39464686 |
tcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttgaagcacaggacatgcacttactcggtttgag |
39464785 |
T |
|
| Q |
201 |
ttactgtttctctgaattgttctttgatata |
231 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||| |
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| T |
39464786 |
ttgatgtttttctgaattgttgtttgatata |
39464816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 39472153 - 39471978
Alignment:
| Q |
1 |
ggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaac |
100 |
Q |
| |
|
|||||||| ||||||||| | |||||| ||||||||||||| || || || |||||||||||||| ||||||||| |||||||||||||||| || ||| |
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|
| T |
39472153 |
ggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaac |
39472054 |
T |
|
| Q |
101 |
tctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca |
176 |
Q |
| |
|
|| | |||||||||| |||||| |||| |||||||||| |||||||||||| || ||||||| |||||||||| |
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|
| T |
39472053 |
tcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttggagcaca |
39471978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 39460354 - 39460139
Alignment:
| Q |
14 |
acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa |
113 |
Q |
| |
|
||||| ||||||| |||| ||||| ||||||||| | |||||| ||||||||||| |||||| ||||| |||||||||| |||||||| | || ||| |
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| T |
39460354 |
acatcggattctgatgtgtatgggagtttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaat |
39460255 |
T |
|
| Q |
114 |
ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctct |
213 |
Q |
| |
|
||||||| | | ||||||||||||||||||| ||||| || ||||||| |||||||||| || |||| ||||||| ||| ||||||||||| | | |
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|
| T |
39460254 |
ctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt-ttt |
39460158 |
T |
|
| Q |
214 |
gaattgttctttgatatac |
232 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
39460157 |
gaattgttctttgatatac |
39460139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 39458346 - 39458498
Alignment:
| Q |
1 |
ggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaac |
100 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| || || |
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| T |
39458346 |
ggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaat |
39458445 |
T |
|
| Q |
101 |
tctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc |
153 |
Q |
| |
|
|| | || |||||||||||||| ||| | || ||| ||||| ||||||||| |
|
|
| T |
39458446 |
tcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttc |
39458498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 39486554 - 39486406
Alignment:
| Q |
23 |
tctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgac |
122 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| || || || | || ||||||||||||| |
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|
| T |
39486554 |
tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac |
39486455 |
T |
|
| Q |
123 |
ctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga |
171 |
Q |
| |
|
| ||| | || ||||||||| ||||||||| || ||||||| ||||| |
|
|
| T |
39486454 |
caacaccaggtgaagggataatcaccacttctgctttcttcatcttgga |
39486406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 39480452 - 39480338
Alignment:
| Q |
39 |
atttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagg |
138 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| || | || |||||||||||||| ||| | || |||| |
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|
| T |
39480452 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagg |
39480353 |
T |
|
| Q |
139 |
gataaacaccacttc |
153 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
39480352 |
gataatcaccacttc |
39480338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 39454743 - 39454588
Alignment:
| Q |
14 |
acatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaa |
113 |
Q |
| |
|
||||||| ||| || | |||||| ||||| | ||| || |||||||||||||| ||||||||| ||||||||||||| || |||||||| | || |||| |
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|
| T |
39454743 |
acatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaa |
39454644 |
T |
|
| Q |
114 |
ctagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
169 |
Q |
| |
|
||| ||| || ||| | ||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
39454643 |
ctaaatggccaacaccaggagaagggataaacaccacttctgctttcttcatgttg |
39454588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 39451086 - 39450942
Alignment:
| Q |
32 |
tgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgg |
131 |
Q |
| |
|
||||||||||| || || || ||||||| |||||| ||||||||| | |||||||||||||| ||||| || | || ||||||||||| | ||| | | |
|
|
| T |
39451086 |
tgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccag |
39450987 |
T |
|
| Q |
132 |
gaaaagggataaacaccacttccactgtcttcatgttggagcaca |
176 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||| |||||| |
|
|
| T |
39450986 |
gaaaagggataaacaccacttctgctttcttcatcttgaagcaca |
39450942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 39475623 - 39475453
Alignment:
| Q |
1 |
ggatttagcgtagacatcagattctgtagtgtgtgggaatttcatgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaac |
100 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||||||| || || || ||||||| |||||| ||||||||| | |||||||||||||| | ||| |
|
|
| T |
39475623 |
ggatttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaac |
39475524 |
T |
|
| Q |
101 |
tctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttgga |
171 |
Q |
| |
|
|| | | |||| |||||| | | | ||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
39475523 |
tcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
39475453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 43312608 - 43312717
Alignment:
| Q |
44 |
atgaccaagacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataa |
143 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||||||| |||||||| || ||||| | || || |||| ||| || ||| | ||| ||||||||| |
|
|
| T |
43312608 |
atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa |
43312707 |
T |
|
| Q |
144 |
acaccacttc |
153 |
Q |
| |
|
|||||||||| |
|
|
| T |
43312708 |
acaccacttc |
43312717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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