View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_high_64 (Length: 240)
Name: NF3117_high_64
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 13114015 - 13113816
Alignment:
| Q |
10 |
aaagaaagaaaatgtggtttttgtttgagtcgttctcactttgatgccatttagcagaaggatcaacgatagggttttatagatggaggaagaataatat |
109 |
Q |
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| T |
13114015 |
aaagaaagaaaatgtggtttttgtttgagtcgttctcactttgatgccatttaccag---gattaacgacctggttttatagatggaggaagaataatat |
13113919 |
T |
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| Q |
110 |
ctgtgcataattatccaaaacttaagaggatagcattgaccatttattaatggaaaatattctcttaaatatctttactatatgtgtgatttttcaaatc |
209 |
Q |
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| T |
13113918 |
ctatgcataattatccaaaacttaagaggatagcattgaccatttattaatggaaaatattctcttaaatatctttactatatgtgtgatttttcaaatc |
13113819 |
T |
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