View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_high_71 (Length: 228)
Name: NF3117_high_71
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_high_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 55825130 - 55825350
Alignment:
| Q |
1 |
cagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825130 |
cagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgc |
55825229 |
T |
|
| Q |
101 |
ctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825230 |
ctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatc |
55825329 |
T |
|
| Q |
201 |
gagagtctactttgcacgtcg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
55825330 |
gagagtctactttgcacgtcg |
55825350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 56149851 - 56149631
Alignment:
| Q |
1 |
cagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149851 |
cagcctttgtttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgc |
56149752 |
T |
|
| Q |
101 |
ctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149751 |
ctctttcttttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatc |
56149652 |
T |
|
| Q |
201 |
gagagtctactttgcacgtcg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
56149651 |
gagagtctactttgcacgtcg |
56149631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University