View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_1 (Length: 1075)
Name: NF3117_low_1
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_1 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 307 - 935
Target Start/End: Original strand, 52947969 - 52948620
Alignment:
| Q |
307 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgtta |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
52947969 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgtta |
52948068 |
T |
|
| Q |
407 |
gggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaa |
504 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
52948069 |
cggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaa |
52948168 |
T |
|
| Q |
505 |
gagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatgttg |
604 |
Q |
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|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52948169 |
gagttaggttatgatgatcaccttaagtatcatttatggtggtatgttattgaagatgataaatacaaaaggattgttgatgataatgacactgatattg |
52948268 |
T |
|
| Q |
605 |
ttggtgactatgttgttgagaacaaacgtgtggctcatttatatgttgaacatttagctataggtatggtaggttcac---------------------a |
683 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| | |
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| T |
52948269 |
ttggtgattatgttattgagaacaaacgtgtggctcatttatatgttgaacattcagttatagggatggtaggttcacatgtggggtagagttctatgga |
52948368 |
T |
|
| Q |
684 |
tttggggcagagttctatggacttggacatttcatggggagttggaggtcaagaaggtcatgtagttgaagaaggcacaatgaatgaaggtgattgtgta |
783 |
Q |
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| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
52948369 |
tgtggggcagagttctatggacttggacatgtcagggggagttggaggtcaagaaggtcatgtagttgaataaggcacaatgaatgaagctgatggtgta |
52948468 |
T |
|
| Q |
784 |
tgtgatgatgaagaaatgagcggtgatggttctgatgactatatgggaagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaa |
883 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52948469 |
tgtgatgatgaagaaatgagtggtgatggttctgatgactatatgggaagtagtgaagatgaagctgctggagtaagattggatgatagtgaagaggaaa |
52948568 |
T |
|
| Q |
884 |
aagctatgggcatggatgatgtgtttttagttgaagatgatgagactcctcc |
935 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
52948569 |
aagctatgggcatgaatgatgggtttttagttgaagatgatgagactcctcc |
52948620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 52947692 - 52947907
Alignment:
| Q |
31 |
ttgacggtgaatcacggcaacaaagtgtaatcgatggtcaacgaaggtttgtgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggt |
130 |
Q |
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||||||||||||||||||||| |||||||||| | || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52947692 |
ttgacggtgaatcacggcaacgaagtgtaatcaacagttagcgaaggtttttgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggt |
52947791 |
T |
|
| Q |
131 |
agaacatttttttcatatcctct--gnnnnnnnnncttgttatattttgtttgttgtttgaatcaaaaaatctttgaatgttagtttgtaatgatgtaaa |
228 |
Q |
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|||||| || | | |||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
52947792 |
agaaca-ttctaacctatcctcttatttttttcttcttcttatcttttgtttgttgtttgaatcaaaaaatctttgaatgctagtttataatgatgtaaa |
52947890 |
T |
|
| Q |
229 |
agagtagaatggatgtc |
245 |
Q |
| |
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||||||||||||||||| |
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| T |
52947891 |
agagtagaatggatgtc |
52947907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 457 - 600
Target Start/End: Original strand, 31810722 - 31810865
Alignment:
| Q |
457 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
556 |
Q |
| |
|
||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
31810821 |
T |
|
| Q |
557 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
600 |
Q |
| |
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| ||||| || || ||||||| | ||||| |||||||||||| |
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| T |
31810822 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
31810865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 909
Target Start/End: Original strand, 31811105 - 31811183
Alignment:
| Q |
831 |
aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt |
909 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||| ||||||||||||| ||| |||| ||||||||| |||| |
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|
| T |
31811105 |
aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt |
31811183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 848 - 935
Target Start/End: Complemental strand, 41029 - 40942
Alignment:
| Q |
848 |
ctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgtttttagttgaagatgatgagactcctcc |
935 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41029 |
ctgctggagtaagattggatgatagtgaggaggaaagagctctaggcatggatgatgggtttttagttgaagatgatgagactcctcc |
40942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 449 - 600
Target Start/End: Original strand, 7797472 - 7797623
Alignment:
| Q |
449 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
548 |
Q |
| |
|
|||||| |||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| |||||| |
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|
| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
|
| Q |
549 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
600 |
Q |
| |
|
| ||||||| ||||| || || ||||||| | ||||| |||||||||||| |
|
|
| T |
7797572 |
tattattgaggatgacaagtatttaaggattatagatgacaatgacactgat |
7797623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 457 - 600
Target Start/End: Complemental strand, 30320491 - 30320348
Alignment:
| Q |
457 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
556 |
Q |
| |
|
||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
30320392 |
T |
|
| Q |
557 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
600 |
Q |
| |
|
| ||||| || || ||||||| | ||||| |||||||||||| |
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|
| T |
30320391 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
30320348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 449 - 600
Target Start/End: Original strand, 19393467 - 19393617
Alignment:
| Q |
449 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
548 |
Q |
| |
|
|||||| |||||||| ||| | |||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||||||||||||| | |||| |||||| |
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|
| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta-aggttatggtggta |
19393565 |
T |
|
| Q |
549 |
tgttattgaagatgataaatacaaaaggattgttgatgataatgacactgat |
600 |
Q |
| |
|
| || |||| ||||| || || ||||||| | ||||| |||||||||||| |
|
|
| T |
19393566 |
tattgttgaggatgacaattatgtaaggattatagatgacaatgacactgat |
19393617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 457 - 600
Target Start/End: Original strand, 22055067 - 22055210
Alignment:
| Q |
457 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
556 |
Q |
| |
|
||||||| ||| | ||| || ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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|
| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
22055166 |
T |
|
| Q |
557 |
aagatgataaatacaaaaggattgttgatgataatgacactgat |
600 |
Q |
| |
|
| ||||| || || ||||||| | ||||| |||||||||||| |
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| T |
22055167 |
aggatgacaagtatgtaaggattatagatgacaatgacactgat |
22055210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 909
Target Start/End: Original strand, 22055417 - 22055495
Alignment:
| Q |
831 |
aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt |
909 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||| ||||||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
22055417 |
aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt |
22055495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 831 - 909
Target Start/End: Original strand, 66 - 144
Alignment:
| Q |
831 |
aagtagtgaagatgaagctgctggagtaagattggatgatagtgaggaggaaaaagctatgggcatggatgatgtgttt |
909 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||||| ||||||||||||| ||| |||| ||||||||| |||| |
|
|
| T |
66 |
aagtagtgaagatgaagctgctggtgttagacttgatgacagtgaggaggaaagagcattgggtttggatgatgggttt |
144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 598
Target Start/End: Complemental strand, 28430291 - 28430160
Alignment:
| Q |
467 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataa |
566 |
Q |
| |
|
|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| ||||||| ||| ||| || || || |
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|
| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtatattaatgaggaggacaa |
28430192 |
T |
|
| Q |
567 |
atacaaaaggattgttgatgataatgacactg |
598 |
Q |
| |
|
|| |||||| ||||||| |||||||||| |
|
|
| T |
28430191 |
gtatgttaggattattgatgacaatgacactg |
28430160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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