View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_10 (Length: 611)
Name: NF3117_low_10
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 5 - 596
Target Start/End: Complemental strand, 27524904 - 27524311
Alignment:
| Q |
5 |
tccaagaatattaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagt |
104 |
Q |
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| T |
27524904 |
tccaacaaaattaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagt |
27524805 |
T |
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| Q |
105 |
tgttgatgttacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccat |
204 |
Q |
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| T |
27524804 |
tgttgatgttacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccat |
27524705 |
T |
|
| Q |
205 |
tttgtactccctttagcaaccaaccactacacttaacttcagttgcagtgagagtaaaagaaagggtcccgtatctttttataaccnnnnnnncacacat |
304 |
Q |
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| T |
27524704 |
tttgtactccctttagcaaccaaccactacacttaacttcagttgcagtgagagtgaaagaaagggtcccgtatctttttataaccaaaaaaacacacat |
27524605 |
T |
|
| Q |
305 |
aaaatgttcctcctttgtccaaagtcagtgtttttaaatgtgctacgtgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataac |
404 |
Q |
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| T |
27524604 |
aaaatgttcctcctttgtccaaagtcagtgtttttaaatgtgctacatgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataac |
27524505 |
T |
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| Q |
405 |
tggttttttgacaattaagttgcatgagaaaatccaactacaattcaaatgattgacattttat---ttttgttaactcttctactcgagagttttagta |
501 |
Q |
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| T |
27524504 |
tggttttttgacaattaagttgcatgagaaaatccaactacaattcaaatga-tgacattttatttattatgttaacccttctactcgagagttttaaga |
27524406 |
T |
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| Q |
502 |
acttgaagttcggtcatgaggcaagtcaatgttaggaaagtatgtnnnnnnnnnttatagttgaattagtggatatgaaattaatgtgaaataat |
596 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||| |
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| T |
27524405 |
acttgaagttcggtcacgaggcaagtcaatgttaggaaagtacgtaaaaaaaaattatagtcaaattagtggatatgaaactaatgtgaaataat |
27524311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 27530489 - 27530313
Alignment:
| Q |
5 |
tccaagaatattaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagt |
104 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| | |
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| T |
27530489 |
tccaacaaaattaagagaaggaattcagtgacataccccataggaggagttttaccaagtccattagcaagaaggtttcttctgagatgctctccatcat |
27530390 |
T |
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| Q |
105 |
tgttgatgttacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctca |
184 |
Q |
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| T |
27530389 |
agt---tgttccctaatgaagaagcagtgacacaaaccaaacaaacatgcaaaagggtcaccaaaactaccaccatctca |
27530313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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