View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_11 (Length: 580)
Name: NF3117_low_11
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 308 - 517
Target Start/End: Original strand, 2607780 - 2607989
Alignment:
| Q |
308 |
aatcatcatcccttctcccaccatatgaatatggatttccaaacaaataatttgcagtctctttccacatattctcctcacaattatttcctttatgaat |
407 |
Q |
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| T |
2607780 |
aatcatcatcccttctcccaccatatggatatggatttccaaacaaataatctgcagtctctttccacatattctcctcacaattatttcctctatgaat |
2607879 |
T |
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| Q |
408 |
gcctacattacaacaattttctatcttcatttttgacaaacaaggccaagtcccaagcaagatttcacaaatatccaaagtttccaatccatatccactg |
507 |
Q |
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| T |
2607880 |
gcctacattacaataattttctctcttcatttttgacaaacaaggccaagtcccaaacaagctttcacaaatatccaaagtttccaatccatatccacta |
2607979 |
T |
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| Q |
508 |
ggatattgag |
517 |
Q |
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|||||||||| |
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| T |
2607980 |
ggatattgag |
2607989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 2607660 - 2607775
Alignment:
| Q |
146 |
caagtaaacatgaaaatttattcctttcacatctttcaatcaaattgttacatttatta----ttacaacagagactagctttacaacttcaaattcttc |
241 |
Q |
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||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |
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| T |
2607660 |
caagtaaacatgaaaatttcttcttttcacat-tttca-tcaaattgttacatttattaattattacaacagagacaaactttacaacttcaaattctt- |
2607756 |
T |
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| Q |
242 |
ccttcaccatggttcatca |
260 |
Q |
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| T |
2607757 |
ccatcaccattgttcatca |
2607775 |
T |
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