View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_17 (Length: 454)

Name: NF3117_low_17
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_17
NF3117_low_17
[»] chr5 (7 HSPs)
chr5 (21-130)||(26620495-26620604)
chr5 (141-420)||(26663791-26664069)
chr5 (171-420)||(26935386-26935632)
chr5 (325-414)||(9846057-9846146)
chr5 (322-401)||(15449787-15449866)
chr5 (322-413)||(26465889-26465980)
chr5 (261-404)||(42140516-42140658)
[»] chr2 (2 HSPs)
chr2 (322-396)||(28155573-28155647)
chr2 (320-410)||(27035274-27035364)
[»] chr3 (2 HSPs)
chr3 (322-413)||(12286393-12286484)
chr3 (322-413)||(19585807-19585898)
[»] chr4 (3 HSPs)
chr4 (320-385)||(22644453-22644518)
chr4 (320-413)||(5240437-5240530)
chr4 (309-413)||(10867969-10868072)
[»] chr8 (1 HSPs)
chr8 (261-404)||(21028717-21028859)
[»] scaffold0006 (1 HSPs)
scaffold0006 (301-385)||(86716-86799)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 26620604 - 26620495
Alignment:
Q  21 tctagagttacttttgcattgtctcatttgaaaaattacatatgtcatgcatcttctcagtcttctaatcatgcaagcatatgatataactccattatat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620604 tctagagttacttttgcattgtctcatttgaaaaattacatatgtcatgcatcttctcagtcttctaatcatgcaagcatatgatataactccattatat 26620505  T
Q  121 catatttcta 130  Q
    ||||||||||    
T  26620504 catatttcta 26620495  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 420
Target Start/End: Complemental strand, 26664069 - 26663791
Alignment:
Q  141 ttttcataaactgtctaacccacattgtcattttgtttt--gtctatttccaccaacactaagcctaaaagttactctgaggcaagtaaatatgaatgtt 238  Q
    |||||||||  | |||||||| |||||| ||||| ||||  || |||||||||||||||||| ||||||| |||   |||||||||||||| ||| ||||    
T  26664069 ttttcataatttttctaaccctcattgtgatttttttttttgtatatttccaccaacactaaccctaaaacttatattgaggcaagtaaatttgattgtt 26663970  T
Q  239 ggaatcaagctatatgaaaaccgagctcactgctgttcaaaggactggaacttggaagctagttgaccttcctccaaatgtttaaacctattggttgtag 338  Q
    ||||||||| || ||| ||   ||||| | |||| || |||  || | || |||||| || |||||  | || ||||||| | ||  ||||| |||||||    
T  26663969 ggaatcaag-ta-atggaatttgagcttagtgctcttgaaaaaacggaaatttggaaacttgttgagttaccaccaaatg-tgaagtctattagttgtag 26663873  T
Q  339 atgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggttatgatcat 420  Q
    |||| | |||||| | || ||||||| |||||||||||||||| |||| ||||||| | | ||||| ||||||||| |||||    
T  26663872 atggatttacaagatcaagcatcatgatgatggttctattgagtgatttaaagctacattggttgcaaagggttataatcat 26663791  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 420
Target Start/End: Complemental strand, 26935632 - 26935386
Alignment:
Q  171 ttttgttttgtctatttccaccaacactaagcctaaaagttactctgaggcaagtaaatatgaatgttggaatcaagctatatgaaaaccgagctcactg 270  Q
    |||| |||||| |||||||||||||||||| ||||||| |||   |||||||||||||| ||| ||||||||||||| || ||| ||   ||||| | ||    
T  26935632 tttttttttgtatatttccaccaacactaaccctaaaacttatattgaggcaagtaaatttgattgttggaatcaag-ta-atggaatttgagcttagtg 26935535  T
Q  271 ctgttcaaaggactggaacttggaagctagttgaccttcctccaaatgtttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatg 370  Q
    || || |||  || | || |||||| || |||||  | || ||||||| | ||  ||||| ||||||||||| | |||||| | || ||||||| |||||    
T  26935534 ctcttgaaaaaacggaaatttggaaacttgttgagttaccaccaaatg-tgaagtctattagttgtagatggatttacaagatcaagcatcatgatgatg 26935436  T
Q  371 gttctattgagagattcaaagctagacttgttgccaagggttatgatcat 420  Q
    ||||||||||| |||| ||||||| | | ||||| ||||||||| |||||    
T  26935435 gttctattgagtgatttaaagctacattggttgcaaagggttataatcat 26935386  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 414
Target Start/End: Complemental strand, 9846146 - 9846057
Alignment:
Q  325 cctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggttat 414  Q
    |||||||||||||| ||||| || ||  | ||||| ||||  ||||| |||||||| ||||||||||||||| | ||||| |||||||||    
T  9846146 cctattggttgtaggtgggtatataaaatcaaacaccatgcagatggatctattgaaagattcaaagctagattagttgcaaagggttat 9846057  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 15449787 - 15449866
Alignment:
Q  322 aaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgt 401  Q
    ||||||||||||||||||||| | ||||| || || |||||||  ||||| || ||||| |||| ||||||| |||||||    
T  15449787 aaacctattggttgtagatggatatacaaagtgaagcatcatgcagatggatcaattgaaagatacaaagctggacttgt 15449866  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 26465980 - 26465889
Alignment:
Q  322 aaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggtta 413  Q
    |||||||| | ||| |||||| | |||||| | ||||||||||  ||||| || ||||| |||| |||||| ||||||||||| ||||||||    
T  26465980 aaacctatagtttgcagatggatatacaagatcaaacatcatgcagatggctcaattgaaagatacaaagcaagacttgttgcaaagggtta 26465889  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 404
Target Start/End: Original strand, 42140516 - 42140658
Alignment:
Q  261 gagctcactgctgttcaaaggactggaacttggaagctagttgaccttcctccaaatgtttaaacctattggttgtagatgggtctacaaggttaaacat 360  Q
    |||||||||||| || |||  ||||||||||||||| || ||||    ||||| ||||  ||||||||| |||||||| ||| | |||||| |||| |||    
T  42140516 gagctcactgctcttgaaaatactggaacttggaagataattgattcacctcctaatg-ctaaacctataggttgtaggtggatttacaagattaagcat 42140614  T
Q  361 catgttgatggttctattgagagattcaaagctagacttgttgc 404  Q
    ||||  |||||  ||||||| |||| ||| || |||||||||||    
T  42140615 catgcagatggcactattgaaagatacaaggccagacttgttgc 42140658  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 396
Target Start/End: Complemental strand, 28155647 - 28155573
Alignment:
Q  322 aaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctaga 396  Q
    |||||||||||||||| |||||| |||||  ||||| ||||||||||||| ||||||||||||| ||||||||||    
T  28155647 aaacctattggttgtaaatgggtttacaaaattaaatatcatgttgatggatctattgagagatacaaagctaga 28155573  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 410
Target Start/End: Complemental strand, 27035364 - 27035274
Alignment:
Q  320 ttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaaggg 410  Q
    |||||||||||||||| |||||| |||  || || ||||||||||||||||| ||| |||| |||| |||||| ||||| |||||||||||    
T  27035364 ttaaacctattggttgcagatggatctttaaagtcaaacatcatgttgatggatctgttgaaagatacaaagcaagactggttgccaaggg 27035274  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 12286393 - 12286484
Alignment:
Q  322 aaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggtta 413  Q
    ||||| ||||| ||||||||| | || || |||||| |||||||||||||||| ||||| |||| |||||| ||| | ||||| ||||||||    
T  12286393 aaacccattggatgtagatggatttataaagttaaatatcatgttgatggttccattgaaagatacaaagccagattagttgcaaagggtta 12286484  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 19585898 - 19585807
Alignment:
Q  322 aaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggtta 413  Q
    ||||| ||||| ||||||||| | || || |||||| |||||||||||||||| ||||| |||| |||||| ||| | ||||| ||||||||    
T  19585898 aaacccattggatgtagatggatttataaagttaaatatcatgttgatggttccattgaaagatacaaagccagattagttgcaaagggtta 19585807  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 22644453 - 22644518
Alignment:
Q  320 ttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagat 385  Q
    ||||||| ||||||||||||||| ||||||| || |||||| ||| ||||||||| || |||||||    
T  22644453 ttaaacccattggttgtagatggatctacaaagtcaaacataatgctgatggttccatagagagat 22644518  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 413
Target Start/End: Original strand, 5240437 - 5240530
Alignment:
Q  320 ttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaagggtta 413  Q
    |||| |||||||| ||||||||| | ||||| || |||  ||||||||||||  ||||||||||||  ||||| ||| | |||||||| |||||    
T  5240437 ttaagcctattggatgtagatggatttacaaagtcaaatttcatgttgatggcactattgagagatataaagcaagattggttgccaaaggtta 5240530  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 10867969 - 10868072
Alignment:
Q  309 cctccaaatgtttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagattcaaagctagacttgttgccaag 408  Q
    |||||||||||| || |||||||| ||||||||| | ||||| || ||   ||||||||||||  ||||||||||||  ||||| ||| | ||||||||     
T  10867969 cctccaaatgtt-aagcctattggatgtagatggatttacaaagtcaattttcatgttgatggcactattgagagatataaagcaagattggttgccaaa 10868067  T
Q  409 ggtta 413  Q
    |||||    
T  10868068 ggtta 10868072  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 21028859 - 21028717
Alignment:
Q  261 gagctcactgctgttcaaaggactggaacttggaagctagttgaccttcctccaaatgtttaaacctattggttgtagatgggtctacaaggttaaacat 360  Q
    |||||||||||| || |||  ||||||||||||||| || ||||    ||||| ||||  ||||||||| |||||||| ||| | |||||| |||| |||    
T  21028859 gagctcactgctcttgaaaatactggaacttggaagataattgattcacctcctaatg-ctaaacctataggttgtaggtggatttacaagattaagcat 21028761  T
Q  361 catgttgatggttctattgagagattcaaagctagacttgttgc 404  Q
    ||||  |||||  ||||||| |||| ||| || |||||||||||    
T  21028760 catgcagatggcactattgaaagatacaaggccagacttgttgc 21028717  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 86716 - 86799
Alignment:
Q  301 ttgaccttcctccaaatgtttaaacctattggttgtagatgggtctacaaggttaaacatcatgttgatggttctattgagagat 385  Q
    |||| ||||||||||||| | ||||| || || ||||| ||| | ||||| || ||||||||||||||||| || ||||||||||    
T  86716 ttgatcttcctccaaatgct-aaaccaataggctgtaggtggatttacaaagtgaaacatcatgttgatggctcaattgagagat 86799  T

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