View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_18 (Length: 453)
Name: NF3117_low_18
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_18 |
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| [»] scaffold0160 (2 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 258 - 440
Target Start/End: Original strand, 19419 - 19601
Alignment:
| Q |
258 |
ccatccatgatgcttaacgagttttgagaaattctgcatcagaaacagcagaattttcaatttgactaacttcatcatcatcaattggagcaggaaggtt |
357 |
Q |
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| T |
19419 |
ccatccatgatgcttaacgagttttgagaaattctgcatcagaaacagcagaattttcaatttgactaacttcatcatcatcaattggagcaggaaggtt |
19518 |
T |
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| Q |
358 |
aagatctataacactttttgtaactctttttgagctgaaaattggaactgttgttgatgatgatccatgaatcacatgtgttc |
440 |
Q |
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| T |
19519 |
aagatctataacactttttgtaactctttttgagctgaaaattggaactgttgttgatgatgatccatgaatcacatgtgttc |
19601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 19164 - 19350
Alignment:
| Q |
19 |
acttggtatttttccataattaactcaaaataaccataaaaaatcatgaacaattatcagaacnnnnnnngtataagtaatataattcagaactgaatta |
118 |
Q |
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| T |
19164 |
acttggtatttt-ccataattaactcaaaataaccataaaaaatcttgaacaattatcagaactttttttgtataagtaatataattcagaactgaatta |
19262 |
T |
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| Q |
119 |
cagttacaaataaaatcattgaagaattattattacaataatatatagagtaactatataagtataacaaaatttgtagaacattatt |
206 |
Q |
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| T |
19263 |
cagttacaaataaaatcattgaagaattattattacaataatatatagagtaactatataagtataacaaaatttgtagaacattatt |
19350 |
T |
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