View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_19 (Length: 452)

Name: NF3117_low_19
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_19
NF3117_low_19
[»] chr1 (14 HSPs)
chr1 (1-443)||(15035352-15035794)
chr1 (1-293)||(14534449-14534741)
chr1 (1-293)||(14502026-14502318)
chr1 (59-293)||(14524472-14524706)
chr1 (1-110)||(15009476-15009585)
chr1 (1-110)||(15030574-15030683)
chr1 (283-443)||(14502740-14502900)
chr1 (1-104)||(15023593-15023696)
chr1 (1-256)||(14465922-14466174)
chr1 (1-202)||(15000873-15001074)
chr1 (1-110)||(15015879-15015988)
chr1 (283-436)||(14523897-14524050)
chr1 (1-256)||(14480829-14481084)
chr1 (354-413)||(14534329-14534388)
[»] scaffold0400 (2 HSPs)
scaffold0400 (59-443)||(10881-11265)
scaffold0400 (41-231)||(5367-5557)
[»] scaffold0365 (2 HSPs)
scaffold0365 (59-443)||(11524-11908)
scaffold0365 (41-231)||(6011-6201)
[»] chr7 (4 HSPs)
chr7 (42-109)||(16023082-16023149)
chr7 (42-109)||(16101174-16101241)
chr7 (42-109)||(16170852-16170919)
chr7 (42-109)||(14603611-14603678)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 15035352 - 15035794
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||| |||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15035352 gggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatc 15035451  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| | |||||||||||||||||||||||  ||||||||||||||||||| || ||| || ||||||| || |||||||||||||||||||||||||||    
T  15035452 acttccgaaattgaaaagtttagttttaagcagcaactccttctacggtgtagttccacaccatattggtgtaatgtccaatctagaaactcttgatttg 15035551  T
Q  201 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactgggtctatct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  15035552 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtacaaactatcctatcttgatctcagctttaattatctcaccgggtctatct 15035651  T
Q  301 caatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaattgggaatttagtcaacct 400  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  15035652 caatttctataggaaagttggccaaaataaaaaatctcatgttacattcgaatcaactttttggccagattcctcgtgaaattgggaatttggtcaacct 15035751  T
Q  401 ccagagactagatcttggaaataacagtctttctggcttcatt 443  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  15035752 ccagagactatatcttggaaataacagtctttttggcttcatt 15035794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 14534741 - 14534449
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  14534741 gggaaggaatcacgtgtgattataaatcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttctcatc 14534642  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| ||||| |  | | |||||||||||    ||||| ||| ||||| ||||| ||| || ||||||| | |||||| | |||| ||||||||||||||    
T  14534641 acttacaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttg 14534542  T
Q  201 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactggg 293  Q
    ||| | ||  | |||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| || |||||||||||||||    
T  14534541 tcagttaacaatctctctggtaccattcccaatagcattggtaatttgtcaaaaatatcttatcttgatctcagtttcaattatctcactggg 14534449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 14502026 - 14502318
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||| |||||| |||| || || |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||    
T  14502026 gggaaggaatcacatgtgataatgattcaaaatccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttatcatc 14502125  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| ||||| |    |  ||||||||||    |||||| ||||| || | ||| ||| || ||||||| |||||||| || ||||| ||||||||||||    
T  14502126 acttccaaaaatccgcaccttagttttaaaaaacaactcattctatggagctgttccacaccatattggagtgatgtcaaacctagacactcttgatttg 14502225  T
Q  201 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatctcactggg 293  Q
    ||||||||| | |||||||||| ||||||||| |   |||||||||||||||||||||| |||||||||||||| || |||||||||| ||||    
T  14502226 tcactaaataatctctctggtaacattcccaaaagtgttggtaatttgtccaaactatcttatcttgatctcagtttcaattatctcattggg 14502318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 59 - 293
Target Start/End: Complemental strand, 14524706 - 14524472
Alignment:
Q  59 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 158  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||| || ||||| |||    
T  14524706 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttcca 14524607  T
Q  159 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 258  Q
     || |||||||  | |||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  14524606 caccatattggtctaatgtgcaatctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactat 14524507  T
Q  259 cgtatcttgatctcagctttaattatctcactggg 293  Q
    | ||||||||||| ||||| |||||||||||||||    
T  14524506 cctatcttgatcttagcttcaattatctcactggg 14524472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15009476 - 15009585
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  15009476 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatc 15009575  T
Q  101 actttcaaaa 110  Q
    |||| |||||    
T  15009576 acttccaaaa 15009585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15030574 - 15030683
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  15030574 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatc 15030673  T
Q  101 actttcaaaa 110  Q
    |||| |||||    
T  15030674 acttccaaaa 15030683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 283 - 443
Target Start/End: Original strand, 14502740 - 14502900
Alignment:
Q  283 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 382  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||| |||||||    ||| |||||||||||||| ||||||| ||||||| ||||||    
T  14502740 atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat 14502839  T
Q  383 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcatt 443  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||  |||||||||||||||    
T  14502840 tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcatt 14502900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15023593 - 15023696
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||    
T  15023593 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggattaaacggtactcttcaaagtctcaatttctcatc 15023692  T
Q  101 actt 104  Q
    ||||    
T  15023693 actt 15023696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 14465922 - 14466174
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||| |||||| ||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  14465922 gggaaggaatcacatgtgatgatgaatcaaaatcaatctacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatc 14466021  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| ||||| |  ||   |||||||| ||   |||||||||||| || ||| | |||    || |||| |||| |||||||||||| ||| |||| |||    
T  14466022 acttccaaaaatccaagaattagttttgagaaacaactccttctatggagttattcca---tattttggtgtgaagtccaatctagatactattgagttg 14466118  T
Q  201 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaact 256  Q
    |||   |||||||||||||||   ||||||| ||||||||||  | ||||||||||    
T  14466119 tcatataatgaactctctggtcatattcccagtaccattggttttctgtccaaact 14466174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15000873 - 15001074
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  15000873 gggaaggaatcacgtgtgattatcaatcaaaatccatcaacatgataaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatc 15000972  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| ||||| |  | |  ||||||||||    ||||| |||  |||| ||||| ||| || ||||||| | |||||| | |||| ||||||||||||||    
T  15000973 acttacaaaaatccacaccttagttttaacaaacaacttcttgcacggagttgttccacaccatattggagagatgtctagtctaaaaactcttgatttg 15001072  T
Q  201 tc 202  Q
    ||    
T  15001073 tc 15001074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15015879 - 15015988
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||| |||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  15015879 gggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaaggtacacttcaaagtctcaatttctcatc 15015978  T
Q  101 actttcaaaa 110  Q
    |||| |||||    
T  15015979 acttccaaaa 15015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 436
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
Q  283 atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat 382  Q
    ||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| |   ||| ||||||||||||||||||||||  |||||    
T  14524050 atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat 14523951  T
Q  383 tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg 436  Q
    ||||||||| ||||||||| ||| |||  |||||||| |||| | |||||||||    
T  14523950 tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg 14523897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 14480829 - 14481084
Alignment:
Q  1 gggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatc 100  Q
    ||||||||||||  |||||| || | || || || || |||||| || ||||||||| | ||| |||||||||||| ||||||||||| |||||||||||    
T  14480829 gggaaggaatcatatgtgataataactcaaaatctattaacaagatagatctcaccagttttgaactaaaaggtacacttcaaagtctcaatttctcatc 14480928  T
Q  101 actttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttg 200  Q
    |||| ||||| |  |||  |||||||| ||   ||||| |||||| || ||| | ||| || ||||||| || |||||||||||  | |||||||||||     
T  14480929 acttccaaaaatccaaaaattagttttgagaaacaacttcttctatggagttattccataccatattggtgtaatgtccaatctgaacactcttgatttt 14481028  T
Q  201 tcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaact 256  Q
    |||| |||  | || | ||| | ||||||||||| |||||||||| |||| |||||    
T  14481029 tcacaaaactacctatatggcagcattcccaatagcattggtaatctgtcaaaact 14481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
Q  354 caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat 413  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  14534388 caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat 14534329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 59 - 443
Target Start/End: Original strand, 10881 - 11265
Alignment:
Q  59 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 158  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  10881 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 10980  T
Q  159 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 258  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  10981 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactat 11080  T
Q  259 cgtatcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaact 358  Q
    | |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11081 cctatcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaact 11180  T
Q  359 ttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcatt 443  Q
    ||| ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11181 tttcggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcatt 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 5367 - 5557
Alignment:
Q  41 caaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactcc 140  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |  ||||||||||    ||| |||    
T  5367 caagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattcc 5466  T
Q  141 ttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 231  Q
    || ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  5467 ttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 5557  T

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Target: scaffold0365 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 59 - 443
Target Start/End: Original strand, 11524 - 11908
Alignment:
Q  59 tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca 158  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||| ||||| |  | || |||||||||||   |||||| ||||  || ||||| |||    
T  11524 tattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttcca 11623  T
Q  159 gacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactat 258  Q
     |  ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  11624 catcatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactat 11723  T
Q  259 cgtatcttgatctcagctttaattatctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaact 358  Q
    | |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11724 cctatcttgatctcagctttaattatctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaact 11823  T
Q  359 ttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcatt 443  Q
    ||| ||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  11824 tttcggccacattcctcgtgaaataggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcatt 11908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 6011 - 6201
Alignment:
Q  41 caaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactcc 140  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |    |  ||||||||||    ||| |||    
T  6011 caagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattcc 6110  T
Q  141 ttctacggtgttgtaccagacaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctggtaccattccca 231  Q
    || ||||| ||||| ||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||  ||||||||||| ||||||||    
T  6111 ttttacggagttgttcctcaccatattggggtgatgtcaaatctggaaactcttgatttatcacttaatagactctctggtaacattccca 6201  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16023082 - 16023149
Alignment:
Q  42 aaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 109  Q
    |||||||||||||| ||||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16023082 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16023149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16101174 - 16101241
Alignment:
Q  42 aaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 109  Q
    |||||||||||||| ||||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16101174 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16101241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16170852 - 16170919
Alignment:
Q  42 aaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 109  Q
    |||||||||||||| ||||| ||| | |||||||||||| |||||||||| |||||||||||| ||||    
T  16170852 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa 16170919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 14603611 - 14603678
Alignment:
Q  42 aaggtaaatctcaccaatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa 109  Q
    ||||||||||| || ||||| ||| | |||||||||||  |||||||||| |||||||||||| ||||    
T  14603611 aaggtaaatctgacaaatatgggattgaaaggtacgctcgaaagtcttaacttctcatcacttccaaa 14603678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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