View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_20 (Length: 422)
Name: NF3117_low_20
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_20 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 6127 - 6509
Alignment:
| Q |
18 |
cttataatttaggacggagggagtattttgttatctacaaaagatgaaaataaaaccgctatatataaatggagctagnnnnnnnnnnnnnnnnagaata |
117 |
Q |
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| T |
6127 |
cttataatttaggacggagcgagtattttgttatttacaaaagatgaaaataaaaccgctatatataaatggagctagttttttattttattttagaata |
6226 |
T |
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| Q |
118 |
catacaatgcatgatggctaggtgttgatatttttgcagtaatacgttgcaaaaagccagctcaataatactattttttatagaaaaagccagcactaga |
217 |
Q |
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| T |
6227 |
catacaatgcatgatggctaggtgttgatatttttgcagtaatacgttgcaaaaagtcagctcaataatactattttttatagaaaaagccagcactaga |
6326 |
T |
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| Q |
218 |
aaagttcatctgcatcaaattagcaatcattttgatattttgacactttcgaatcatagaaatgttaataaatgccagttatac--attcgcaaaatcaa |
315 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
6327 |
aaagttcatgtgcgtcaaattagcaatcattttgatattttgacactttcgaatcatagaaatgttaataaatgccagttatacatattcacaaaatcaa |
6426 |
T |
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| Q |
316 |
catcatattaattgggcatgcagtggccattattatcaaggaaaaaatgaaaattactatatcaagtaagtaagcacatagtgc |
399 |
Q |
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| T |
6427 |
catcatattaattgggcatgcagtggccattattatcaagg-aaaaatgaaaattactatatcaagtaagtaagcacatagtgc |
6509 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 29511351 - 29511323
Alignment:
| Q |
18 |
cttataatttaggacggagggagtatttt |
46 |
Q |
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| T |
29511351 |
cttataatttaggacggagggagtatttt |
29511323 |
T |
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