View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_21 (Length: 418)
Name: NF3117_low_21
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 71 - 404
Target Start/End: Original strand, 14653241 - 14653573
Alignment:
| Q |
71 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgttgaatgaaaattcgaaagaccagctctacgcca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
14653241 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgctgaataaaaattccaaagaccagctctacgcca |
14653340 |
T |
|
| Q |
171 |
acaaagctcactgttatgacattgnnnnnnntacatgatcaatatctttgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatg |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14653341 |
acaaagctcactgttatgacattgaaaaaac-acataatcaatatcttcgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatg |
14653439 |
T |
|
| Q |
271 |
taacaaaaatcaacaaggnnnnnnnngctaatggcaatagctttccttaatatatatgatcatatatcagtagtcactaaagaatgaactagcttccctt |
370 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14653440 |
taacaaaaatcaacaagggaaaaaaagctaatggcaatagctttccttaaaatatatgatcatatatcagtagtcactaaagaatgaactagcttccctt |
14653539 |
T |
|
| Q |
371 |
attcactgagttgcctctttgttctccaagtaat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14653540 |
attcactgagttgcctctttgttctccaagtaat |
14653573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 71 - 404
Target Start/End: Original strand, 14663032 - 14663364
Alignment:
| Q |
71 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgttgaatgaaaattcgaaagaccagctctacgcca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
14663032 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgctgaataaaaattccaaagaccagctctacgcca |
14663131 |
T |
|
| Q |
171 |
acaaagctcactgttatgacattgnnnnnnntacatgatcaatatctttgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatg |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14663132 |
acaaagctcactgttatgacattgaaaaaac-acataatcaatatcttcgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatg |
14663230 |
T |
|
| Q |
271 |
taacaaaaatcaacaaggnnnnnnnngctaatggcaatagctttccttaatatatatgatcatatatcagtagtcactaaagaatgaactagcttccctt |
370 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14663231 |
taacaaaaatcaacaagggaaaaaaagctaatggcaatagctttccttaaaatatatgatcatatatcagtagtcactaaagaatgaactagcttccctt |
14663330 |
T |
|
| Q |
371 |
attcactgagttgcctctttgttctccaagtaat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14663331 |
attcactgagttgcctctttgttctccaagtaat |
14663364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 14706997 - 14706911
Alignment:
| Q |
316 |
cttaatatatatgatcatatatcagtagtcactaaagaatgaactagcttcccttattcac--tgagttgcctctttgttctccaag |
400 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
14706997 |
cttaaaatatatgatcatatatcagtagtcactaaagaatgaactagctttccttattcactgtgagttgtttctttgttctccaag |
14706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 14668639 - 14668749
Alignment:
| Q |
71 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgttgaatgaaaattcgaaagaccagctctacgcca |
170 |
Q |
| |
|
||||||||||||||| |||| ||||| || || ||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14668639 |
taaaattctgcaacacgcagacaaaaaattatgctccagtccgagagtgcgaagt-----atgctgttgaatgaaatttcgaa-gaccagctctacgcca |
14668732 |
T |
|
| Q |
171 |
acaaagctcactgttat |
187 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14668733 |
acaaagctcactgttat |
14668749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 14707162 - 14707105
Alignment:
| Q |
223 |
accattttcgaataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaat |
280 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14707162 |
accatttttgcataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaat |
14707105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 14668747 - 14668814
Alignment:
| Q |
213 |
tatctttgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaat |
280 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
14668747 |
tatcttcgataccattttcgcataaggcacaattcggaaggtaaaatagttgtcaatgtaacaaaaat |
14668814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 14668931 - 14668993
Alignment:
| Q |
338 |
cagtagtcactaaagaatgaactagcttcccttattcactgagttgcctctttgttctccaag |
400 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
14668931 |
cagtagtcactaaagaatgaactggcttgccttattcactgacttgtttctttgttctccaag |
14668993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 30732561 - 30732451
Alignment:
| Q |
71 |
taaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaagcatgctgttgaatgaaaattcgaaagaccagctctacgcca |
170 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| ||||||||||||||| ||||| || ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
30732561 |
taaaattctgcaacacgcagacaaaaaattctgctccagtccgagagtgcgaagt-----atactgttgaatgaaatttcgaa-gaccagctctacgcca |
30732468 |
T |
|
| Q |
171 |
acaaagctcactgttat |
187 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30732467 |
acaaagctcactgttat |
30732451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University