View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_23 (Length: 403)
Name: NF3117_low_23
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 389
Target Start/End: Original strand, 25230294 - 25230677
Alignment:
| Q |
6 |
cttcttcttcctttgaacaatgtatatggtggtgcactgttcatcttcttcaatttgtcaaaaaccaacacataagcaataaatttaactccaaatccaa |
105 |
Q |
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| T |
25230294 |
cttcttcttcctttgaacaatgtatatggtggtgcactgttcatcttcttcaatttgtcaaaaaccaacgcagaagcaataaatttaaccccaaatccga |
25230393 |
T |
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| Q |
106 |
ttcataagtaccaaccccaaattgaacaatacatattcattcataaacccaattcagaatcactctgataaacccatttttcatcattgttaaacccatt |
205 |
Q |
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| T |
25230394 |
ttcataagtacaaaccccaaattgaacaatacatattcattcataaacccaattcagaatcactctaataaacccattattcataattgttaaacccatt |
25230493 |
T |
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| Q |
206 |
tttgctgataaactcaagaaacggaaggatgagaagatgtttacgttgatttcgtgaccaattccggactctaatatactgatttcttcacgctacctga |
305 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
25230494 |
ttagctgataaactcaagaaacggaaggatgagaagacgtttacgttgatttcgtgaccaattccggactctaatgtattgatttcttcacgctacctga |
25230593 |
T |
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| Q |
306 |
cgatgattccgtgcctggtggttccgatccggatccggatccggctcaatttgttgcggcggcgtctccgttggggttgtgagt |
389 |
Q |
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| T |
25230594 |
cgatgatttcgtgcctggtggttccgatccggatccggatccggctcaatttgttgcggcggcatctccgttggggttgtgagt |
25230677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 236 - 389
Target Start/End: Original strand, 28924620 - 28924773
Alignment:
| Q |
236 |
gagaagatgtttacgttgatttcgtgaccaattccggactctaatatactgatttcttcacgctacctgacgatgattccgtgcctggtggttccgatcc |
335 |
Q |
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| T |
28924620 |
gagaagatgtgaacgttgattccgtaaccaattcaggactccaatgtaccgatttcttcatgctaccgggcgatggttccgtgcctagcggttccgatcc |
28924719 |
T |
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| Q |
336 |
ggatccggatccggctcaatttgttgcggcggcgtctccgttggggttgtgagt |
389 |
Q |
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|||||||||||||||| |||| |||||||||||||||||| |||||| |||| |
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| T |
28924720 |
agatccggatccggctccctttgctgcggcggcgtctccgttcgggttgggagt |
28924773 |
T |
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