View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_26 (Length: 390)
Name: NF3117_low_26
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 55824801 - 55825138
Alignment:
| Q |
43 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824801 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
55824900 |
T |
|
| Q |
143 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
242 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824901 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
55825000 |
T |
|
| Q |
243 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825001 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
55825100 |
T |
|
| Q |
343 |
ctctgcataccacaaagccgtctccattgcagcctttg |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
55825101 |
ctctgcataccacaaagccgtctccattgcagcctttg |
55825138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 43 - 380
Target Start/End: Complemental strand, 56150180 - 56149843
Alignment:
| Q |
43 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150180 |
catttaagaaaggtggaaacattaacatggtttccaaattgtatggaagaattactgcttataataagtgatctttcagtgcaaggagtcttcttttctt |
56150081 |
T |
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| Q |
143 |
ccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150080 |
ccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcg |
56149981 |
T |
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| Q |
243 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaattttccat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56149980 |
aagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttcaattgccacttttgcagaatttgccat |
56149881 |
T |
|
| Q |
343 |
ctctgcataccacaaagccgtctccattgcagcctttg |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
56149880 |
ctctgcataccacaaagccgtctccattgcagcctttg |
56149843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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