View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_27 (Length: 384)
Name: NF3117_low_27
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 15179295 - 15179531
Alignment:
| Q |
18 |
agcactttgtcacaggaaaatgaaaattaaaggacaata------ttaaactcaaagataaagaaaacacattattgtactgagagttagaacaaggaaa |
111 |
Q |
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| T |
15179295 |
agcactttgtcaaaggaaaatgaaaattaaaggacaatacaattattaaactcaaagataaagaaaacacattattgtactgagagttagaacaaggaaa |
15179394 |
T |
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| Q |
112 |
ttggaggaagaacagtgtctgaagaagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaac |
211 |
Q |
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| T |
15179395 |
ttggaggaagaacagtgtctgaagaagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaac |
15179494 |
T |
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| Q |
212 |
actctgatcaaagcagccaccaatgatggaatgagta |
248 |
Q |
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| T |
15179495 |
actctgatcaaagcagccaccaatgatggaatgagta |
15179531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 136 - 248
Target Start/End: Original strand, 15201072 - 15201184
Alignment:
| Q |
136 |
aagaaaaatggtgatcgaaggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaat |
235 |
Q |
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| T |
15201072 |
aagaaaaatggtgagcgaaggagcaagtgtaacagcagcaatgattgcagctcaattcgtggaagtgggtggtgatactctaatgaaagcagccaccaaa |
15201171 |
T |
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| Q |
236 |
gatggaatgagta |
248 |
Q |
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| T |
15201172 |
gatggaatgagta |
15201184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 15179596 - 15179658
Alignment:
| Q |
313 |
ctaccacagaaaaagagcccctccttcaatttcattaccaattttatgtagaatgtttcttct |
375 |
Q |
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| T |
15179596 |
ctaccacagaaaaagagcccctccttcaatttcatcatcaattttatgtagaatgtttcttct |
15179658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 15208162 - 15208256
Alignment:
| Q |
154 |
aggagcaagtgtaacagcaacaatggttgcagttcaattcctagaagtgggtggtaacactctgatcaaagcagccaccaatgatggaatgagta |
248 |
Q |
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| T |
15208162 |
aggagcaagtgtaacaacaacaatgattgcagctcaaatcgttgaagtgggtggtgaaactctaatgaaatcagccactaaagatggaatgagta |
15208256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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