View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_28 (Length: 383)
Name: NF3117_low_28
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 9058708 - 9059071
Alignment:
| Q |
1 |
caccccttcaaaagtataggaaaaaacgacacatgcaaatgaataatcaaatttatagatggtgtgcgggaaaaggaaacagaaaaggnnnnnnncaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9058708 |
caccccttcaaaagtataggaaaaaacgacacatgcaaatgaaaaatcaaatttatagatggtgtgcgggaaaaggaaacagaaaaggaaaaaaacaatg |
9058807 |
T |
|
| Q |
101 |
tcaagaagaaaggagttcaatatagcaatactcgaacgaagcaatcatggaagtgcattcggagaagtgctgctggaacagttttgtccctagcagtagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9058808 |
tcaagaagaaaggagttcaatatagcaatactcgaacgaagcaatcatggaagtgcattcggagaagtgctgctggaacagttttgtccctagcagtagc |
9058907 |
T |
|
| Q |
201 |
atctgtcacagtcttcaaaactatatactccagatcatggcatgatttttcatagtagtttaagctgagtgattttcctgtagaaaccactgaaaaaatg |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9058908 |
atccgtcacagtcttcaaaactatatactccagatcatggcatgatttttcatagtagtttaagctgagtgattttcctgtagaaaccactgaaaaaatg |
9059007 |
T |
|
| Q |
301 |
ataatcaaattcaagaatgtaaccatgacagccatgtcaattaagagtactttgattatttttt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9059008 |
ataatcaaattcaagaatgtaaccatgacagccatgtcaattaagagtactttgattatttttt |
9059071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 318
Target Start/End: Complemental strand, 31747843 - 31747658
Alignment:
| Q |
133 |
cgaacgaagcaatcatggaagtgcattcggagaagtgctgctggaacagttttgtccctagcagtagcatctgtcacagtcttcaaaactatatactcca |
232 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||| ||| || | || ||||| ||| ||| |||| | |
|
|
| T |
31747843 |
cgaatgaagcagtcatggaagtgcattcggagaagcgctgcagggacagttttgtctgaagcagtggcagctttaactgtcttggcaacaataaactcta |
31747744 |
T |
|
| Q |
233 |
gatcatggcatgatttttcatagtagtttaagctgagtgattttcctgtagaaaccactgaaaaaatgataatcaaattcaagaat |
318 |
Q |
| |
|
|||| |||||| |||||||||||||| | || ||||| || ||||| ||||| | |||||| | || ||| ||| |||||||| |
|
|
| T |
31747743 |
catcagggcatgtcttttcatagtagttgtaactaagtgaattccctgttgaaactattgaaaacaagagaattaaactcaagaat |
31747658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University