View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_32 (Length: 355)
Name: NF3117_low_32
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 3907978 - 3908309
Alignment:
| Q |
13 |
agtttcttcatcatatcaccagctaagtaagaaagcactgtggcaacagcaccagtgctaacatagtaaaacacagtttgaaaatatgttgagtaactgt |
112 |
Q |
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| T |
3907978 |
agtttcttcatcatatcaccagctaagtaagaaagcactgtggcaacagcaccagtgctaacatagtaaaacacagtttgaaaatatgttgagtaactgt |
3908077 |
T |
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| Q |
113 |
ttggtctcttgatataagctttagcaatagaaagcaatgtgatgcataaaagtgaagctcctgcaactgctgctagcttgaaatccttttcatcgttctc |
212 |
Q |
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| T |
3908078 |
ttggtctcttgatataagctttagcaatagaaagcaatgtgatgcataaaagtgaagctcctgcaactgctgctagcttgaaatccttttcatcgttctc |
3908177 |
T |
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| Q |
213 |
acggaatgtgaagccgtatacaactggtggtattagtccaaaaataatgaatgataagattgcaataaatgcatgaagaatgaaattcttcctctggcct |
312 |
Q |
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| T |
3908178 |
acggaatgtgaagccgtatacaactggtggtattagtccaaaaataatgaatgataagattgcaataaatgcatgaagaatgaaattcttcctctggcct |
3908277 |
T |
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| Q |
313 |
agcacttcattgtattgatccaccacttcttc |
344 |
Q |
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| T |
3908278 |
agcacttcattgtattgatctaccactgcttc |
3908309 |
T |
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