View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_34 (Length: 346)
Name: NF3117_low_34
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 28322205 - 28322400
Alignment:
| Q |
1 |
aacatgcatgcaagagaattaggaaaagtgttgagattgtgttgtggagtgagagatgagagcatagtggaattgttacattgtgatttgtgattaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28322205 |
aacatgcatgcaagagaattaggaaaattgttgagattgtgttgtggagtgagagatgagagcatagtggaattattacattgtgatttgtgattaatga |
28322304 |
T |
|
| Q |
101 |
ttattgtccacaacattaaacacaaatcgcgagtcttatgttaacataactgaaataacagaaacatatggttccacactttttggtatacttctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28322305 |
ttattgtccacaacattaaacacaaatcgcgagtcttatgttaacataactgaaataacagaaacatatggttccacactttttggtatacttctt |
28322400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 28322463 - 28322532
Alignment:
| Q |
258 |
ctgattttatttccattagaagaaacaaagagaacaaaacaacgggtgcggttatcatgcataaggaatc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28322463 |
ctgattttatttccattagaagaaacaaagagaacaaaacaacgggtgcggttatcatgcataacgaatc |
28322532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 37643180 - 37643152
Alignment:
| Q |
300 |
cgggtgcggttatcatgcataaggaatct |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37643180 |
cgggtgcggttatcatgcataaggaatct |
37643152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 44261242 - 44261214
Alignment:
| Q |
299 |
acgggtgcggttatcatgcataaggaatc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44261242 |
acgggtgcggttatcatgcataaggaatc |
44261214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 16967458 - 16967488
Alignment:
| Q |
297 |
caacgggtgcggttatcatgcataaggaatc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16967458 |
caacgggtgcggttatcatgcataaggaatc |
16967488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 39548583 - 39548555
Alignment:
| Q |
299 |
acgggtgcggttatcatgcataaggaatc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39548583 |
acgggtgcggttatcatgcataaggaatc |
39548555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University