View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_39 (Length: 320)
Name: NF3117_low_39
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 75 - 304
Target Start/End: Complemental strand, 13834333 - 13834100
Alignment:
| Q |
75 |
cttaatttttcatatccatcttactttggggtcattttt-cagacataacctatta---attaatgatgtgacaactatagttatggggcaactttgaat |
170 |
Q |
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| T |
13834333 |
cttaatttttcatatccatcttactttggggtcatttttgcagacataacctattattaattaatgatgtgacaactatagttatggggcaactttgaat |
13834234 |
T |
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| Q |
171 |
agtcgtttcattaatatgtggtcacataggtgctacccgacattaataaatatatcagatcaacaacgacgacgacaccaaaatgagatgactttgaaaa |
270 |
Q |
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| T |
13834233 |
agtcgtttcattaatatgtggtcacataggtgctacccgacattaatgaatatatcagatcaacaacaacgacgacaccaaaatgagatgactttgaaaa |
13834134 |
T |
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| Q |
271 |
ttcctggaaaaataccgttttttaaatgaatttt |
304 |
Q |
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|||||||||||||| | |||||||||||| |||| |
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| T |
13834133 |
ttcctggaaaaatatcattttttaaatgattttt |
13834100 |
T |
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