View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_40 (Length: 319)
Name: NF3117_low_40
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 45791587 - 45791880
Alignment:
| Q |
17 |
agagagcttgggagggatatagaacatggttgttagagccaacgagtggcaaccccgaattgcttccgtgacattctcacggtgatatttggatccagtc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791587 |
agagagcttgggagggatatagaacatggttgttagagccaacgagtggcaaccccgaattgcttccgtgacattctcacggtgatatttggatccagtc |
45791686 |
T |
|
| Q |
117 |
atattgatttgtgatatctttctatggtagaattatgagatgtgcgatattcttttatccaagtttattgttggggcaaatcaaagggtcaaaaagcact |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791687 |
atattgatttgtgatatgtttctatggtagaattatgagatgtgcgatattcttttatccaagtttattgttggggcaaatcaaagggtcaaaaagcact |
45791786 |
T |
|
| Q |
217 |
gcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttccttctgtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45791787 |
gcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttccttctgtg |
45791880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University