View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_41 (Length: 302)

Name: NF3117_low_41
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_41
NF3117_low_41
[»] chr4 (1 HSPs)
chr4 (11-302)||(39783861-39784152)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 39784152 - 39783861
Alignment:
Q  11 aatgagagagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaaaaatgttgtcttgtgatcataca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39784152 aatgagagagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaaaaatgttgccttgtgatcataca 39784053  T
Q  111 ttcaaatatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggtaggaaaatactaacaggtaaagtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39784052 ttcaaatatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggtaggaaaatactaacaggtaaagtt 39783953  T
Q  211 gtcgggagatannnnnnnnnnnnnngatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatactaaaaggaagtagat 302  Q
    |||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39783952 gtcgggagatattttttatttttttgatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatactaaaaggaagtagat 39783861  T

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