View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_42 (Length: 297)
Name: NF3117_low_42
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 29206586 - 29206838
Alignment:
| Q |
17 |
atgaaattttgtttcaaagagtttagcgaccatactccctgtataaaagatttccaatgtgcttgcacacatacgcgcgcgcgcacacacnnnnnnnnnn |
116 |
Q |
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| T |
29206586 |
atgaaattttgtttcaaagagtttagcgactatactccctgcataaaagatttccaatgtgcttgcacacatacacgcgcgcacacatatatat------ |
29206679 |
T |
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| Q |
117 |
nnncacaccatcctttgttatttacctttgtgggaagaatggcttatcaaaataaggcatcaattgagctcgtggaaccatttctttcctaagcaaacgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206680 |
----acaccatcctttgttatttacctttgtgggaagaatggcttatcaaagtaaggcatcaattgagctcgtggaaccatttctttcctaagcaaacgt |
29206775 |
T |
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| Q |
217 |
atctcttcctcttcaatcatctgttccatattgaattaattagtaaaaaatattgctctcactct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29206776 |
atctcttcctcttcaatcatctgttccatattgaattaattagt--aaaatattgctctcactct |
29206838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 38379509 - 38379376
Alignment:
| Q |
126 |
atcctttgttatttacctttgtgggaagaatggcttatcaaaataaggcatcaattgagctcgtggaaccatttctttcctaagcaaacgtatctcttcc |
225 |
Q |
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|||| ||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||| ||||||||| || ||||| |||| ||||||||||||| |
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| T |
38379509 |
atccattgttatttacctatttggggagaatggcttatcaaaataaggcattaattgagctcttggaaccatatccttccttagcacacgtatctcttcc |
38379410 |
T |
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| Q |
226 |
tcttcaatcatctgttccatattgaattaattag |
259 |
Q |
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| T |
38379409 |
tcttcaatcatctattccacatttcattaattag |
38379376 |
T |
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