View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_45 (Length: 282)
Name: NF3117_low_45
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 23551635 - 23551370
Alignment:
| Q |
1 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttcataagaaatgtaatccacattatattggcttaaaacaatagtcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23551635 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttaataagaaatgtaatctacattatattggcttaaaacaatagtcaaat |
23551536 |
T |
|
| Q |
101 |
acatgtgacccggtttgcagctattcttcctttaaaaatgtttgggacatnnnnnnntaacatgaaaaattaaccaattaatcgtagacccgagatcaat |
200 |
Q |
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| T |
23551535 |
acatgtgacccggtttgcagctattcttccttcaaaaatgtttgggacataaaaaaataacatgaaaaattaaccaattaatcatagacccaagatcaat |
23551436 |
T |
|
| Q |
201 |
aactaaaatatttctctaatatgtatgatatgtgacgagtggcattatttctgtatgatatgtgac |
266 |
Q |
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| T |
23551435 |
aactaaaatatttctctaatgtgtatgatatgtgacgagtggcattatttctgtatgatatgtgac |
23551370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 30835081 - 30835349
Alignment:
| Q |
1 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttcataagaaatgtaatccacattatattggcttaaaacaatagtcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||| |
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| T |
30835081 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttcataagaaatgttatctacaatataatggcttaaaacaatagtcaaat |
30835180 |
T |
|
| Q |
101 |
acatgtgacccggtttgcagctattcttcctttaaaaatgtttgggacatnnnnnnntaacatgaaaaattaaccaattaatcgtagacccgagatcaat |
200 |
Q |
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| T |
30835181 |
acatgtgacccggtttgcagctattcttcttttaaaaatgtttgggacataaaaaaataacatgaaaaattaaccaattaatcatagacccaagaccaat |
30835280 |
T |
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| Q |
201 |
aactaaaatatttctctaatatgtatgatatgtgacgagtggcattatttctgtatgatatgtgacaag |
269 |
Q |
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| T |
30835281 |
aactaaaatattactctaatatgtatgatatgtgacgagtggcattatttctgtatgatatgtgacaag |
30835349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 30815949 - 30816214
Alignment:
| Q |
1 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttcataagaaatgtaatccacattatattggcttaaaacaatagtcaaat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||| ||||||||||||||||||||| |
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| T |
30815949 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaattttataagaaatgttatcaacgttatataggcttaaaacaatagtcaaat |
30816048 |
T |
|
| Q |
101 |
acatgtgacccggtttgcagctattcttcctttaaaaatgtttgggacatnnnnnnntaacatgaaaaattaaccaattaatcgtagacccgagatcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
30816049 |
acatgtgacccggtttgcagctattcttcctttaaaaatgtttgggacataaaaaaataacatgaaaaattaaccaattaatcatagacccaagaccaag |
30816148 |
T |
|
| Q |
201 |
aactaaaatatttctctaatatgtatgatatgtgacgagtggcattatttctgtatgatatgtgac |
266 |
Q |
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|||||||||||| |||||||||||| |||||||||| |||| ||||||||| |||||||||||||| |
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| T |
30816149 |
aactaaaatattactctaatatgtacgatatgtgacaagtgacattatttccgtatgatatgtgac |
30816214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30834971 - 30835045
Alignment:
| Q |
1 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaatttcataagaaatgtaatccacatta |
75 |
Q |
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| T |
30834971 |
tgtgttgtttaagattttaagcaagaaatacgtctcatttacttcaaaattttataagaaatgttatctacatta |
30835045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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