View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_5 (Length: 783)
Name: NF3117_low_5
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 33920713 - 33921177
Alignment:
| Q |
9 |
acgttggagtataaattaagataatgaggtagatcttacaaataagttgccacatattgtacataaggtacaaaattcttgttatggacagtttttaaat |
108 |
Q |
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| T |
33920713 |
acgttggagtataaattaagataatgaggtagatcttacaaataagttgccacat--tgtacataaggtacaaaattcctgttatggacagtttttaaat |
33920810 |
T |
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| Q |
109 |
cgtacaattttgctac---------acatgatagagaccgacactcatcgtatcttaatcacttt------------atacgtaaattgttaatacatta |
187 |
Q |
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| T |
33920811 |
cgtacaattttgctactagtttctcacatgatagagaccgacactcatcgtatcttaatcactttctctctcactttataagtaaattgttaatacatta |
33920910 |
T |
|
| Q |
188 |
nnnnnnnngtaagtaaaaggaaaattttaatttaattaattttctctgaagacatgtcaatttgcttggtaaggggccacctatttagggtagaggctag |
287 |
Q |
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| T |
33920911 |
ttatttt-gtaagtaaaaggaaaattttaatttaattaattttctctgaagaaatgtcaatttgcttggtaaggggccacctatttagggtagaggctag |
33921009 |
T |
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| Q |
288 |
actatggacaaaccaattcgatttttctttttaaaaaacagcaaaagaggtatgtagcatttgagaggggtagtattatccataaccaaatacaaatgtg |
387 |
Q |
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| T |
33921010 |
actatggacaagccaattcgatttttctttttaaaaaacagcaaaagaggtatgtagcatttgagagggggagtattatccataaccaaatacaaatgtg |
33921109 |
T |
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| Q |
388 |
atgcctaagaagaacaagagaaacatgaactccgagaccactcaagatcatgacctatcccctcccca |
455 |
Q |
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| T |
33921110 |
atgcctaagaagaacaagagaaacatgaactccgagaccactcaagatcatgacctatcccctcccca |
33921177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 545 - 766
Target Start/End: Original strand, 33921260 - 33921478
Alignment:
| Q |
545 |
cacatcagttaacatcattaaaccatttagtnnnnnnnnncattattaaaccattttctctttnnnnnnnntatatatatgtgtgtgagtgtgctgaatt |
644 |
Q |
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| T |
33921260 |
cacatcagttaacatcattaaaccatttagtaaaaaaaa-cattattaaaccattttctctttaaataaa--atatatatgtgtgtgagtgtgctgaatt |
33921356 |
T |
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| Q |
645 |
attttgatttggatttgtcccaagcatttctccccttcactatatgaatgcaatccaaagaataataatacatcatttccctcttacctttagcttaaaa |
744 |
Q |
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| T |
33921357 |
attttgatttggttttgtcccaagcatttctccccttcactatatgaatgcaatccaaagaataataatacatcatttccctcttacctttagcttaaaa |
33921456 |
T |
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| Q |
745 |
ccacttttaggaccgagcctat |
766 |
Q |
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| T |
33921457 |
ccacttttaggaccgagcctat |
33921478 |
T |
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