View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_50 (Length: 260)

Name: NF3117_low_50
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_50
NF3117_low_50
[»] chr5 (2 HSPs)
chr5 (17-164)||(33541761-33541908)
chr5 (66-154)||(18571269-18571357)
[»] chr1 (4 HSPs)
chr1 (69-202)||(8814178-8814311)
chr1 (69-212)||(247022-247168)
chr1 (69-212)||(251206-251355)
chr1 (66-115)||(235374-235423)
[»] chr6 (7 HSPs)
chr6 (20-147)||(212955-213082)
chr6 (62-154)||(7029976-7030068)
chr6 (62-151)||(7012983-7013072)
chr6 (62-151)||(9170965-9171054)
chr6 (62-151)||(7025919-7026008)
chr6 (66-151)||(7041639-7041724)
chr6 (62-151)||(9159374-9159463)
[»] chr3 (2 HSPs)
chr3 (66-201)||(9494646-9494784)
chr3 (66-214)||(9344003-9344151)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 33541761 - 33541908
Alignment:
Q  17 caaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541761 caaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttg 33541860  T
Q  117 acgtctccaccaccaaccaaagattcagccactaactgaacagtggag 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541861 acgtctccaccaccaaccaaagattcagccactaactgaacagtggag 33541908  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 18571269 - 18571357
Alignment:
Q  66 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 154  Q
    |||||||| ||  ||||||||| ||| |||| ||||||||| |||||||| | ||  |||||| |||||||||||||| ||| ||||||    
T  18571269 tcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagattcatccattaactg 18571357  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 8814311 - 8814178
Alignment:
Q  69 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 168  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||| |  || || ||| ||| ||||||||||||||||||||||||||| ||||| |    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  169 ccggtccaacagcaactgtccgtccagttttgtc 202  Q
    |||||||||||| ||| ||| |||||||||||||    
T  8814211 ccggtccaacagtaacagtctgtccagttttgtc 8814178  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 247022 - 247168
Alignment:
Q  69 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga---gt 165  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| | ||||||||    |    
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  166 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataa 212  Q
    | ||||||||||   ||||||||| |||||||||||| || ||||||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataa 247168  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 251355 - 251206
Alignment:
Q  69 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 168  Q
    ||||||||  |||||||||||||||  | ||||||||| |||||||| |  |||||||||||||||||||||| |||||||||||| |||||||| || |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  169 ccggtc------caacagcaactgtccgtccagttttgtcgacagcataa 212  Q
    | ||||      |||||| ||||||||||||||| ||||| || ||||||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataa 251206  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 235374 - 235423
Alignment:
Q  66 tcataaacatccactaacaacaaatcacccttgctctccactaagaattt 115  Q
    |||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  235374 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattt 235423  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 213082 - 212955
Alignment:
Q  20 atgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacg 119  Q
    |||||||||||||||||  ||| ||||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| | |    
T  213082 atgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaacaacaaatcaccctcgctctccactaagaatttcatg 212983  T
Q  120 tctccaccaccaaccaaagattcagcca 147  Q
     |||||||| ||||||| | ||||||||    
T  212982 cctccaccatcaaccaatggttcagcca 212955  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 7029976 - 7030068
Alignment:
Q  62 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 154  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || | |||||||||||||||||  ||||||||||||||    
T  7029976 acaatcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaaggctcagccactaactg 7030068  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 7012983 - 7013072
Alignment:
Q  62 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 151  Q
    |||||||||||||||  |||||||||||||  ||| |||||||||||||||||| | ||| || ||||||||||||| ||||||||||||    
T  7012983 acaatcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 9170965 - 9171054
Alignment:
Q  62 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 151  Q
    |||||||||||| ||| ||||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||| |||||    
T  9170965 acaatcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaactaa 9171054  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 7025919 - 7026008
Alignment:
Q  62 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 151  Q
    ||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| | ||| || || |||| ||||| ||||||||||||    
T  7025919 acaattataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 7041639 - 7041724
Alignment:
Q  66 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 151  Q
    |||||||||||| ||||||||||||| |||||||| ||| ||||||||||   || ||||| ||||||||||| ||||||||||||    
T  7041639 tcataaacatccgctaacaacaaatctcccttgctttccgctaagaatttcttgtttccacgaccaaccaaaggttcagccactaa 7041724  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 9159463 - 9159374
Alignment:
Q  62 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 151  Q
    |||||||||| | |||  |||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| ||||||||||||    
T  9159463 acaatcataagcctccgataacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccactaa 9159374  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 9494784 - 9494646
Alignment:
Q  66 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccacca---accaaagattcagccactaactgaacagtgg 162  Q
    ||||||||||| ||||||||||||||||| |  ||||| ||||||||||||| ||| || ||||||   ||||||||||||||||||||||  | ||||     
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtga 9494685  T
Q  163 agtcgtccggtccaacagcaactgtccgtccagttttgt 201  Q
    |||| ||| |||||| || | ||||||||||||||||||    
T  9494684 agtcatccagtccaagagtagctgtccgtccagttttgt 9494646  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 9344003 - 9344151
Alignment:
Q  66 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagt 165  Q
    |||||||  ||||||| |||||| || ||||  ||||| |||||||||||   ||| || ||||||||||||| ||||   ||||| || ||| | ||||    
T  9344003 tcataaatgtccactagcaacaactctccctctctctcgactaagaattttttgtccccgccaccaaccaaaggttcaataactaagtggacattcgagt 9344102  T
Q  166 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataaag 214  Q
     |||||| |||||   ||||||| | ||| ||||||||||| |||||||    
T  9344103 tgtccggcccaaccataactgtctgaccatttttgtcgacaacataaag 9344151  T

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