View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_51 (Length: 258)
Name: NF3117_low_51
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 1088756 - 1088529
Alignment:
| Q |
18 |
ggtatggggttgactttttggtttgtttaaaacattgtcatgcgaccttcgtattannnnnnnnnnnnnacagtgaaatatcttattaatttcttggtaa |
117 |
Q |
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| T |
1088756 |
ggtatggggttgactttttggtttgtttaaaactttgtcatgcgaccttcgtaat------ttttttttacagtgaaatatcttattaatttcttggtaa |
1088663 |
T |
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| Q |
118 |
tatatattttgtttgtcaagtaatctaatagggagataaataaatgaggaatttgaggttcgaacttccagaatatttcaaagatgtatttcccttatat |
217 |
Q |
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| T |
1088662 |
tatatattttgtttgtcaagtagtctaataggtagataaataaatgaggaatttgaggttcgaacttccagaatattgcaaagatgtatttcccttatat |
1088563 |
T |
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| Q |
218 |
agtgtcatggctgtcggaaatagtagcgaatgct |
251 |
Q |
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| T |
1088562 |
tgtgtcatggctgtcggaaatagtagcgaatgct |
1088529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 1047982 - 1047851
Alignment:
| Q |
87 |
acagtgaaatatcttattaatttcttggtaatatatattttgtttgtcaagtaatctaatagggagataaataaatgaggaatttgaggttcgaacttcc |
186 |
Q |
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| T |
1047982 |
acagtgaaatatctttgtaattccttggtaataaatattttgtttgtcaagtagtctaataggcaggtgaataagtgagaaattcgaggttcgaacttct |
1047883 |
T |
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| Q |
187 |
agaatatttcaaagatgtatttcccttatata |
218 |
Q |
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| T |
1047882 |
agtatattgcaaaattgtattttccttctata |
1047851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 218
Target Start/End: Complemental strand, 1073775 - 1073652
Alignment:
| Q |
95 |
atatcttattaatttcttggtaatatatattttgtttgtcaagtaatctaatagggagataaataaatgaggaatttgaggttcgaacttccagaatatt |
194 |
Q |
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| T |
1073775 |
atatctttgtaatttctcggtaatatatattttgtatgtcaagtagtctaataggtagatatatatgtgaggaatttcaggttcaaacttctaatatatt |
1073676 |
T |
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| Q |
195 |
tcaaagatgtatttcccttatata |
218 |
Q |
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|||| ||||||| |||| |||| |
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| T |
1073675 |
gcaaaattgtattttccttctata |
1073652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 1048046 - 1047994
Alignment:
| Q |
18 |
ggtatggggttgactttttggtttgtttaaaacattgtcatgcgaccttcgta |
70 |
Q |
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| T |
1048046 |
ggtatggggttgaccttttggcttgctcaaaacattgtcatgtgaccttcgta |
1047994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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