View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_53 (Length: 255)
Name: NF3117_low_53
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 8338164 - 8337938
Alignment:
| Q |
18 |
taaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
8338164 |
taaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaa |
8338065 |
T |
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| Q |
118 |
ttgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtgcatctctttgttgcactc |
217 |
Q |
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| T |
8338064 |
ttgttaaggttgtcaagagaaaagacaatgtacacattgtctcagttgtactaataacaatgtggtttgttactttgatgtgcatctctttgttgcactc |
8337965 |
T |
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| Q |
218 |
tatatatatactaatgtacagtatcat |
244 |
Q |
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| T |
8337964 |
tatatatatactaatgtacagtatcat |
8337938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 36100240 - 36100070
Alignment:
| Q |
55 |
aaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaatgtacacat |
154 |
Q |
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| T |
36100240 |
aaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagagaaaaaacaacgctctcat |
36100141 |
T |
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| Q |
155 |
tgtctcagttgtactgataacaatgtggtttgttactttgatgtgcatctctttgttgcactctatatata |
225 |
Q |
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| T |
36100140 |
tgtttccatggtactaacagaaacgtggtttgttacttggttgtgcatctcattgttgcgctctatatata |
36100070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 21482274 - 21482146
Alignment:
| Q |
18 |
taaatgacttcagagataggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaa |
117 |
Q |
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||||||| |||||||||| |||||| ||| ||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||| || |
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| T |
21482274 |
taaatgatatcagagatagaggaattcaaagattgagaaaagcaattgagaaaattttgaaagggtgattgtgatgttgttgttgaaatagacatgacaa |
21482175 |
T |
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| Q |
118 |
ttgttaaggttgtcaagagaaaagacaat |
146 |
Q |
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| T |
21482174 |
ttgttaaagttatgaagagaaaagacaat |
21482146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 36090839 - 36090933
Alignment:
| Q |
51 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaa |
145 |
Q |
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|||||||||||| |||||||| ||| ||||| ||||||||||||||||| |||| ||||| || || ||||| ||||||||||||||| |||| |
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| T |
36090839 |
tgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagagaaaaaacaa |
36090933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 34972148 - 34972199
Alignment:
| Q |
51 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttg |
102 |
Q |
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| T |
34972148 |
tgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 6838253 - 6838181
Alignment:
| Q |
74 |
ttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaat |
146 |
Q |
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| T |
6838253 |
ttgaataggtgattttgctgttgttgttgaattagacaagacaattgttaaggttgccataagaaaacacaat |
6838181 |
T |
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