View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_54 (Length: 254)
Name: NF3117_low_54
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_54 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 34405347 - 34405177
Alignment:
| Q |
20 |
gagaaattagggtcattggtgaatagtttgagaccttcattggataaaggatttggtatcaatggtgtatttggtagtggtgaatcagtttccaacacac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
34405347 |
gagaaattagggtcattggtgaatagtttgagaccttcattggataaaggatttggtatcaatggtgtatttggtagtggtgaatcagttttcca---ac |
34405251 |
T |
|
| Q |
120 |
acagaaaaatttattggttaattttgtgttacatgttccattaataaattcctttattttgttgatttttatat |
193 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34405250 |
acaaaaaaatttatgggttaattttgtgttacatgttccatttataaattcctttattttgttgatttttatat |
34405177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 34405141 - 34405091
Alignment:
| Q |
204 |
tgtaatggtttgttccaagttaaaattattactttaaatttcttaacatgt |
254 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
34405141 |
tgtaatggtttgttccaagttaaagttattactttaaacttcttaacatgt |
34405091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 10129217 - 10129256
Alignment:
| Q |
215 |
gttccaagttaaaattattactttaaatttcttaacatgt |
254 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
10129217 |
gttccaagttaaaattactactttaaacttcttaacatgt |
10129256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 30288928 - 30288889
Alignment:
| Q |
215 |
gttccaagttaaaattattactttaaatttcttaacatgt |
254 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
30288928 |
gttccaagttaaaattactactttaaacttcttaacatgt |
30288889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 2060105 - 2060067
Alignment:
| Q |
216 |
ttccaagttaaaattattactttaaatttcttaacatgt |
254 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2060105 |
ttccaagttaaagttactactttaaatttcttaacatgt |
2060067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University