View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3117_low_58 (Length: 250)
Name: NF3117_low_58
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_58 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 15180153 - 15179909
Alignment:
| Q |
6 |
agtgagatgaaagactttaccaaatacaattgccacatccgttatggttagatcttccactaacatctatgacttgggtataactttaaaatttcacaaa |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15180153 |
agtgacatgaaagactttaccaaatacaattgccacatccgatatggttagaccttccactaacatctatgacttgggtataacttcaaaatttcacaac |
15180054 |
T |
|
| Q |
106 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15180053 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagcagggagaaggtcaagcatagcaga |
15179954 |
T |
|
| Q |
206 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15179953 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaat |
15179909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 15189688 - 15189585
Alignment:
| Q |
147 |
aaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcagatgctagtgtgggagagctacattcaattccagtattcgtta |
246 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| |||| |||||||| |||||||||||| | ||||||||||||| || |||||||||||||| ||| |
|
|
| T |
15189688 |
aaccttgaaattacagcaagtatgaacgtgaaagcagggacaaggtcaaccatagcagatgccaatgtgggagagctatatccaattccagtattcatta |
15189589 |
T |
|
| Q |
247 |
aaat |
250 |
Q |
| |
|
|||| |
|
|
| T |
15189588 |
aaat |
15189585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 15201648 - 15201610
Alignment:
| Q |
148 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
186 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
15201648 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15201610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 15208595 - 15208557
Alignment:
| Q |
148 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
186 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
15208595 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15208557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University