View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_59 (Length: 249)
Name: NF3117_low_59
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8337779 - 8337540
Alignment:
| Q |
1 |
actaaactttgtttgttctttaagagttttcttttgcaaaactctttaagaaaaacatcaaaattatatagcttagtcttgtttctaagagtggagaagt |
100 |
Q |
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| T |
8337779 |
actaaactttgtttgttctttaagagttttcttttacaaaactctttaagaaaaacatcaaaattatatagcctagtcttgtttctaagagtggagaagt |
8337680 |
T |
|
| Q |
101 |
tgcattaaatggaaatgaaaatattgttattatatttactacacattttgatcactattataagcattaaaccat-ttttaagttcattcaataaatgat |
199 |
Q |
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| T |
8337679 |
tgcattaaatggaaatgaaaatattgttattatatttactacacatttcgatcactattataagcattaaaccattttttaagttcattcaataaatgat |
8337580 |
T |
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| Q |
200 |
gtagacagcatattatatagacatcatacatcaattcatc |
239 |
Q |
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| T |
8337579 |
gtagacagcatattatatagacatcatacatcaattcatc |
8337540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 3106080 - 3106028
Alignment:
| Q |
150 |
gatcactattataagcattaaaccatttttaagttcattcaataaatgatgta |
202 |
Q |
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|||||||||||||| || |||| | ||||| ||||||||||||||||||||| |
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| T |
3106080 |
gatcactattataaacaaaaaacaacttttaggttcattcaataaatgatgta |
3106028 |
T |
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