View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_6 (Length: 777)
Name: NF3117_low_6
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 4136073 - 4136241
Alignment:
| Q |
19 |
aacttgattgtatatattacatcaagcaatatgtattnnnnnnnc-aagattattagtaaatattaccaacattttataaattattttggttaatgattg |
117 |
Q |
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| T |
4136073 |
aacttgattgtatatattacatcaagcaatatgtattaaaaaaaataagattattagtaaatattaccaacattttataaattattttggttaatgattg |
4136172 |
T |
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| Q |
118 |
gtgtttatttttatctaaaagctgttgggatgatttttttttaaagaaactgatgggatcaattttaat |
186 |
Q |
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| T |
4136173 |
gtgtttatttttatctaaaagctgatgggatgatttttttttaaagaaactgatgggatcaattttaat |
4136241 |
T |
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Target: chr2 (Bit Score: 115; Significance: 5e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 273 - 415
Target Start/End: Original strand, 26427486 - 26427628
Alignment:
| Q |
273 |
tgaaagaaatataggacttctagaggtgaaagtgttttgggtttcaattttcttcgaaatacataatctttttaatatggaggaattataaaattgtatt |
372 |
Q |
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| T |
26427486 |
tgaaagaaatataggacttccagaggtgtaagtgttttgggttttaattttcttcgaaatacataatccttttaatatggaggaattaaaaagttgtatt |
26427585 |
T |
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| Q |
373 |
tgaggaagattttagagattttacatgaattcaaatctatgtt |
415 |
Q |
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| T |
26427586 |
tgaggaagattttagaggttttacatgaattcaaatctatgtt |
26427628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 624 - 713
Target Start/End: Original strand, 26427879 - 26427968
Alignment:
| Q |
624 |
ctcccaaacaaagtcctaagcggaagacagtgttgcagcaaacttgtacggtttgagctacgatctcaatatgttattctcatcatttag |
713 |
Q |
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| T |
26427879 |
ctcccaaacaaagtcctaagcggaagacagtgttgcagcaaacttgtacggtttgagctacgatctcaatatgttattctcatcatttag |
26427968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 486 - 575
Target Start/End: Original strand, 26427699 - 26427795
Alignment:
| Q |
486 |
ctcttttaaacaatgtgaaattagatttcacaatttttatcatatt-------tcggaactccaaaaatctttctctcccatacaaacttctaaaca |
575 |
Q |
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| T |
26427699 |
ctcttttaaacaatgtgaaattagatttcacaatttttatcatatttcgaaaatcggaactccaaaagtctttccctcccatacaaacttctaaaca |
26427795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 712 - 761
Target Start/End: Original strand, 26428059 - 26428108
Alignment:
| Q |
712 |
agaaaattgtgtgctcaaattgaatccaaaatacgattttatgtggtatg |
761 |
Q |
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| T |
26428059 |
agaacattgtgtgctcaaattgaatccaaaatacgattttatgtggtatg |
26428108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 26427441 - 26427491
Alignment:
| Q |
207 |
ttaggcttcgtttgcgggtttatatggcaaggaatgggatggttttgaaag |
257 |
Q |
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| T |
26427441 |
ttaggcttcgtttgcgagtttatagggcaatgaatgggatggctttgaaag |
26427491 |
T |
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