View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_63 (Length: 245)
Name: NF3117_low_63
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27605927 - 27606170
Alignment:
| Q |
1 |
atttactggcttgtccttatcaaatctcaatcacttaaagtatattcttgcatatttaatgctacttctgggtaatagtttcagtgatcgtgcttttggt |
100 |
Q |
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| T |
27605927 |
atttactggcttgtccttatcaaatctcaatcacttaaagtatattcttgcatatttaatgctacttctgggtaatagtttcagtgatcgtgcttttggt |
27606026 |
T |
|
| Q |
101 |
ttatttacaaggttaccaagggttatttctttagttacaagtttagttacttgtataaaaaggtgttcggtaaagaggttgacaaagttatctcacattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27606027 |
ttatttacaaggttaccaagggttatttctttagttacaagtttagttacttgtataaaaaggtgttcggtaaagaggttgacaaagttatctctcattt |
27606126 |
T |
|
| Q |
201 |
tctgtttctctcactctttccatcttcttattctttctctgctc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27606127 |
cctgtttctctcactctttccatcttcttattctttctctgctc |
27606170 |
T |
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