View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_65 (Length: 242)
Name: NF3117_low_65
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 7237584 - 7237732
Alignment:
| Q |
1 |
tttggttattttattttttaccgtgcttccaggaatcaaactcaggttctttttattgggagagagagtcatgttctcaattctctaccatgtcgatagt |
100 |
Q |
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| T |
7237584 |
tttggttattttattttttatcgtgcttccaggaatcaaactcagattctttttattgggagagagagtcatgttctcaattctctaccatattgatagt |
7237683 |
T |
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| Q |
101 |
taacatattgcaaattttgaaccaagatgtgaaattatcgaacacctaa |
149 |
Q |
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| T |
7237684 |
taacatattgcaaattttgaaccaagatgtgaaattatcgaacacctaa |
7237732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7237759 - 7237815
Alignment:
| Q |
169 |
gatttcacaggcagggccaaggatatgtcttggtaaggattctgcatatcttcaaat |
225 |
Q |
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| T |
7237759 |
gatttcacaggcagggccaaggatatgtcttggtaaggattctgcatatcttcaaat |
7237815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7242211 - 7242267
Alignment:
| Q |
169 |
gatttcacaggcagggccaaggatatgtcttggtaaggattctgcatatcttcaaat |
225 |
Q |
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| T |
7242211 |
gatttcacaggcagggccaaggatatgtcttggtaaggattctgcatatcatcaaat |
7242267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 49590651 - 49590595
Alignment:
| Q |
169 |
gatttcacaggcagggccaaggatatgtcttggtaaggattctgcatatcttcaaat |
225 |
Q |
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| T |
49590651 |
gattacacaggcagggccaaggatatgtctaggtaaggattctgcatatcttcaaat |
49590595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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