View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_68 (Length: 239)

Name: NF3117_low_68
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_68
NF3117_low_68
[»] chr4 (23 HSPs)
chr4 (109-222)||(24288042-24288155)
chr4 (131-222)||(10733259-10733350)
chr4 (131-222)||(10739352-10739443)
chr4 (131-222)||(10947028-10947119)
chr4 (131-222)||(10953121-10953212)
chr4 (109-222)||(26963330-26963445)
chr4 (109-222)||(50168648-50168763)
chr4 (109-222)||(6257194-6257309)
chr4 (103-222)||(48161014-48161132)
chr4 (103-222)||(48167233-48167351)
chr4 (130-222)||(49976642-49976734)
chr4 (109-218)||(26956818-26956929)
chr4 (134-219)||(3769625-3769710)
chr4 (109-222)||(33458255-33458371)
chr4 (109-195)||(4632869-4632957)
chr4 (109-191)||(34308061-34308144)
chr4 (131-210)||(19686341-19686420)
chr4 (138-222)||(9237418-9237502)
chr4 (159-222)||(33461434-33461497)
chr4 (104-198)||(55473129-55473222)
chr4 (136-173)||(50156049-50156086)
chr4 (155-219)||(50427434-50427497)
chr4 (186-222)||(4632446-4632482)
[»] chr1 (14 HSPs)
chr1 (109-222)||(50306244-50306359)
chr1 (109-222)||(34740041-34740156)
chr1 (109-222)||(1078279-1078394)
chr1 (131-222)||(25387517-25387608)
chr1 (103-222)||(24926738-24926858)
chr1 (103-222)||(27955216-27955336)
chr1 (103-222)||(31058099-31058220)
chr1 (131-222)||(25381548-25381639)
chr1 (131-222)||(44410065-44410156)
chr1 (103-222)||(24963685-24963806)
chr1 (134-222)||(31051599-31051687)
chr1 (109-222)||(12183568-12183688)
chr1 (131-195)||(38151988-38152052)
chr1 (134-222)||(8092862-8092950)
[»] chr6 (19 HSPs)
chr6 (109-222)||(32035275-32035390)
chr6 (131-222)||(8650816-8650907)
chr6 (131-222)||(8662794-8662885)
chr6 (103-222)||(21782736-21782857)
chr6 (109-222)||(4580310-4580425)
chr6 (109-222)||(18778638-18778754)
chr6 (109-221)||(31756202-31756318)
chr6 (109-212)||(21190855-21190960)
chr6 (133-222)||(17581681-17581770)
chr6 (131-222)||(21197034-21197125)
chr6 (131-222)||(25354266-25354357)
chr6 (142-222)||(25343679-25343759)
chr6 (28-103)||(2281349-2281423)
chr6 (159-222)||(21783350-21783413)
chr6 (159-222)||(21789573-21789636)
chr6 (130-222)||(6098035-6098128)
chr6 (131-222)||(34603344-34603434)
chr6 (131-222)||(34724621-34724711)
chr6 (108-222)||(21770545-21770662)
[»] chr2 (16 HSPs)
chr2 (109-222)||(28682934-28683049)
chr2 (109-222)||(35090638-35090753)
chr2 (109-222)||(35084665-35084780)
chr2 (131-222)||(36750470-36750561)
chr2 (109-222)||(35438699-35438813)
chr2 (109-222)||(13456155-13456270)
chr2 (109-222)||(13462096-13462211)
chr2 (109-222)||(13149675-13149790)
chr2 (103-222)||(30965383-30965505)
chr2 (109-223)||(11048542-11048658)
chr2 (109-222)||(31002432-31002548)
chr2 (109-222)||(31008410-31008526)
chr2 (103-222)||(44716787-44716909)
chr2 (131-222)||(23343616-23343707)
chr2 (133-189)||(1388035-1388090)
chr2 (16-98)||(17929374-17929455)
[»] chr3 (24 HSPs)
chr3 (103-222)||(30051085-30051206)
chr3 (131-222)||(10244347-10244438)
chr3 (109-222)||(49151667-49151782)
chr3 (109-222)||(49157734-49157849)
chr3 (131-222)||(10238225-10238316)
chr3 (109-222)||(11839714-11839829)
chr3 (132-222)||(17055807-17055897)
chr3 (109-222)||(8331842-8331957)
chr3 (109-219)||(55003401-55003513)
chr3 (109-222)||(11846052-11846167)
chr3 (109-222)||(38449054-38449167)
chr3 (109-222)||(38455541-38455654)
chr3 (109-222)||(42191209-42191324)
chr3 (109-222)||(42197151-42197266)
chr3 (108-222)||(53069042-53069158)
chr3 (131-222)||(10760663-10760754)
chr3 (109-222)||(28964923-28965036)
chr3 (131-222)||(48128060-48128151)
chr3 (130-222)||(10766883-10766975)
chr3 (109-219)||(17593270-17593383)
chr3 (109-198)||(24643540-24643632)
chr3 (131-222)||(46656739-46656830)
chr3 (165-222)||(34300552-34300609)
chr3 (103-186)||(13445142-13445227)
[»] chr8 (19 HSPs)
chr8 (109-222)||(14799405-14799520)
chr8 (109-222)||(9935334-9935449)
chr8 (109-222)||(32890944-32891059)
chr8 (109-222)||(32897068-32897183)
chr8 (109-222)||(42992992-42993108)
chr8 (109-222)||(7771287-7771402)
chr8 (109-222)||(5542149-5542264)
chr8 (109-222)||(14417996-14418108)
chr8 (109-222)||(36819026-36819141)
chr8 (103-209)||(24250171-24250278)
chr8 (131-198)||(39727333-39727400)
chr8 (131-222)||(39735565-39735656)
chr8 (109-209)||(1882740-1882843)
chr8 (131-222)||(22219729-22219821)
chr8 (130-200)||(31379434-31379504)
chr8 (143-198)||(31399062-31399117)
chr8 (109-186)||(1171414-1171492)
chr8 (109-198)||(10705922-10706014)
chr8 (179-222)||(10700084-10700127)
[»] scaffold0236 (1 HSPs)
scaffold0236 (131-222)||(5590-5681)
[»] chr7 (18 HSPs)
chr7 (131-222)||(339426-339517)
chr7 (109-222)||(3817300-3817415)
chr7 (131-222)||(351841-351932)
chr7 (131-222)||(3811182-3811273)
chr7 (131-222)||(28420972-28421063)
chr7 (109-222)||(20239006-20239121)
chr7 (109-222)||(42767283-42767399)
chr7 (109-222)||(12804055-12804170)
chr7 (131-222)||(35148017-35148108)
chr7 (109-222)||(5849580-5849696)
chr7 (131-222)||(43540040-43540131)
chr7 (29-103)||(36966958-36967032)
chr7 (141-222)||(30219269-30219350)
chr7 (132-222)||(22741932-22742029)
chr7 (131-222)||(26383681-26383772)
chr7 (103-222)||(5979156-5979278)
chr7 (109-210)||(26381136-26381238)
chr7 (45-81)||(2764818-2764854)
[»] chr5 (20 HSPs)
chr5 (109-222)||(28525375-28525490)
chr5 (109-222)||(28531471-28531586)
chr5 (109-222)||(7389537-7389652)
chr5 (131-222)||(12686192-12686283)
chr5 (131-222)||(12692294-12692385)
chr5 (107-222)||(24054390-24054507)
chr5 (131-222)||(41297332-41297423)
chr5 (103-222)||(14610204-14610327)
chr5 (131-209)||(30384391-30384469)
chr5 (103-222)||(16215157-16215278)
chr5 (109-222)||(32096949-32097065)
chr5 (100-222)||(32094139-32094264)
chr5 (109-222)||(30772338-30772454)
chr5 (109-222)||(19059753-19059868)
chr5 (131-222)||(19066120-19066211)
chr5 (131-222)||(26316805-26316896)
chr5 (131-198)||(26509929-26509993)
chr5 (130-222)||(37896310-37896402)
chr5 (103-161)||(8706448-8706508)
chr5 (39-88)||(18937600-18937649)
[»] scaffold0012 (1 HSPs)
scaffold0012 (103-219)||(172873-172991)
[»] scaffold0440 (1 HSPs)
scaffold0440 (109-222)||(1182-1298)
[»] scaffold0363 (1 HSPs)
scaffold0363 (109-222)||(611-723)
[»] scaffold0208 (2 HSPs)
scaffold0208 (109-198)||(6602-6693)
scaffold0208 (109-222)||(12451-12566)
[»] scaffold0185 (1 HSPs)
scaffold0185 (139-222)||(5978-6061)
[»] scaffold0047 (1 HSPs)
scaffold0047 (10-95)||(72976-73060)
[»] scaffold0085 (1 HSPs)
scaffold0085 (131-220)||(38485-38574)
[»] scaffold1114 (1 HSPs)
scaffold1114 (131-176)||(1186-1231)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 24288155 - 24288042
Alignment:
Q  109 aaatttaggtcttaataaatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatct 208  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  24288155 aaatttaggtcttaataaatagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgtatct 24288056  T
Q  209 acgacgtgtttgat 222  Q
    ||||| ||||||||    
T  24288055 acgacatgtttgat 24288042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10733259 - 10733350
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  10733259 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgat 10733350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10739352 - 10739443
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  10739352 atttcataaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 10739443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10947028 - 10947119
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  10947028 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgat 10947119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10953121 - 10953212
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  10953121 atttcataaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 10953212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 26963330 - 26963445
Alignment:
Q  109 aaatttaggtcttaataaatc--aatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||    |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| | ||| | |||||    
T  26963330 aaatttaggtcttaataaaaacaaatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatgaacggat 26963429  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  26963430 ctacgacatgtttgat 26963445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 50168763 - 50168648
Alignment:
Q  109 aaatttaggtcttaataaatcaa--tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||||| | |  || ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  50168763 aaatttaggtcttaataaaaccagattacataaaacacgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgaat 50168664  T
Q  207 ctacgacgtgtttgat 222  Q
     |||||| ||||||||    
T  50168663 atacgacatgtttgat 50168648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 6257194 - 6257309
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||  |||  ||||||||| |||||||||| ||| || |||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  6257194 aaatttaggtcttaatataaatagatttcataatacatgttcaacaatcataaatcaacagcggaagcaaacaaaacattgaacatgattatgatcggat 6257293  T
Q  207 ctacgacgtgtttgat 222  Q
    |||| || ||||||||    
T  6257294 ctacaacatgtttgat 6257309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 48161132 - 48161014
Alignment:
Q  103 tgttaaaaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| |||||||||||||||||||  |  ||||||||||| ||||||||    |||||||||||||||||||||| ||||||||||||||| ||||| |    
T  48161132 tgttagaaatttaggtcttaataaaaatagatttcataaaatatgttcaac---tatgaatcaatagcggaagcaaacaaaacattgaacataattatga 48161036  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    ||||||||||||| ||||||||    
T  48161035 tcggatctacgacatgtttgat 48161014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 48167351 - 48167233
Alignment:
Q  103 tgttaaaaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| |||||||||||||||||||  |  ||||||||||| ||||||||    |||||||||||||||||||||| ||||||||||||||| ||||| |    
T  48167351 tgttagaaatttaggtcttaataaaaatagatttcataaaatatgttcaac---tatgaatcaatagcggaagcaaacaaaacattgaacataattatga 48167255  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    ||||||||||||| ||||||||    
T  48167254 tcggatctacgacatgtttgat 48167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 49976734 - 49976642
Alignment:
Q  130 aatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||| |||||||||||| |||||||| |||||||||||||| ||||||||    
T  49976734 aatttcataaaacatattcaacaattatgaatcgatagcgaaagcaaacaaaacattgaatatgattatgatcggatctacgacatgtttgat 49976642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 26956818 - 26956929
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || ||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||| | ||| | |||||    
T  26956818 aaatttaggtcttaataaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaataaaacattgaacataagtatgaacggat 26956917  T
Q  207 ctacgacgtgtt 218  Q
    ||||||| ||||    
T  26956918 ctacgacatgtt 26956929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 3769710 - 3769625
Alignment:
Q  134 tcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgttt 219  Q
    |||||||| ||||||||||||||||||||||||    |||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  3769710 tcataaaatatgttcaataattatgaatcaataatttaagcaaacaaaacattgaacatgattatgatcggatctacgacatgttt 3769625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 33458255 - 33458371
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| | |||||||| |||  | |||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  33458255 aaatttaggtcttaattaaaaacagatttcataatatatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattatgatcgga 33458354  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  33458355 tctacgacatgtttgat 33458371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 4632957 - 4632869
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgat 195  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||    
T  4632957 aaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattattaatcaacagcggaagcaaacaaaacattgaacatgat 4632869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 34308061 - 34308144
Alignment:
Q  109 aaatttaggtcttaataaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaaca 191  Q
    ||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  34308061 aaatttacgtcttaataaaacagattttataaaacatgttcaataattatgaatcaatagcggaagcatacaaaatattgaaca 34308144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 19686341 - 19686420
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctac 210  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||| ||||| ||||||| | ||||| |||||||||||    
T  19686341 atttcataaaacatgttcaataactataaatcaataacggaagcaaacaaaatattgaacgtaattatcatcggatctac 19686420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 9237502 - 9237418
Alignment:
Q  138 aaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||| ||||||||| |||||  ||||||| || ||||||||| ||||||||  |||||| |||||| ||||||||    
T  9237502 aaaacatgttcaatgattatgaatgaatagtcgaagcaaacagaacattgaatatgattatgctcggatttacgacatgtttgat 9237418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 33461434 - 33461497
Alignment:
Q  159 aatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||| |||||||||||||||||||||  |||||| |||||| ||||||||    
T  33461434 aatcaatagtggaagcaaacaaaacattgaacatgattatggtcggatttacgacatgtttgat 33461497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 55473129 - 55473222
Alignment:
Q  104 gttaaaaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    |||| |||||||||||||||||  ||  |||||||||||| |||||||||||| |   |||||||||||||||||  |||| |||||| ||||||||    
T  55473129 gttagaaatttaggtcttaatagaaacaaatttcataaaatatgttcaataataa---atcaatagcggaagcaaataaaatattgaatatgattat 55473222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 50156086 - 50156049
Alignment:
Q  136 ataaaacatgttcaataattatgaatcaatagcggaag 173  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  50156086 ataaaacatgttcaacaattatgaatcaatagcggaag 50156049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 50427497 - 50427434
Alignment:
Q  155 tatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgttt 219  Q
    ||||||| ||||| |||||||| |||||||||||| |||||||| ||||||| |||||| |||||    
T  50427497 tatgaattaatagtggaagcaatcaaaacattgaa-atgattatgatcggatgtacgacatgttt 50427434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4632482 - 4632446
Alignment:
Q  186 tgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  4632482 tgaacatgattatgatcggatctacgacatgtttgat 4632446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 50306359 - 50306244
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50306359 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattataatcggat 50306260  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  50306259 ctacgacatgtttgat 50306244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 34740156 - 34740041
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  34740156 aaatttaggtcttaatataaacagatttcataaaacatgttcatcaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 34740057  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  34740056 ctacgacatgtttgat 34740041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 1078394 - 1078279
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  1078394 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattattaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 1078295  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  1078294 ctacgacatgtttgat 1078279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 25387517 - 25387608
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  25387517 atttcataaaacatgttcaacaaatatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 25387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 24926738 - 24926858
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-caatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataat 201  Q
    |||| ||||||||||||||||||||  ||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||| |     
T  24926738 tgttgaaaatttaggtcttaataaaaacagattcataaaacatgttcaacgattatgaatcaatagcggaagcaaccaaaacattgaacattaatatgaa 24926837  T
Q  202 cggatctacgacgtgtttgat 222  Q
    |||||||||||| ||||||||    
T  24926838 cggatctacgacatgtttgat 24926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 27955336 - 27955216
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||| |    
T  27955336 tgttagaaatttaggtcttaataaaaacagatttcataaaacatgtttaataatcat-aatcaatagcggaagcaaacaaaacattgaacatgattatga 27955238  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    |||||||||| || ||||||||    
T  27955237 tcggatctacaacatgtttgat 27955216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 31058220 - 31058099
Alignment:
Q  103 tgttaaaaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| ||||||||||||||||| || || ||||||||| |||||||||| |||  | |||||||||||||||||| ||||||||||||||||||||| |    
T  31058220 tgttagaaatttaggtcttaatataaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatga 31058121  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    ||||||||||||| ||||||||    
T  31058120 tcggatctacgacatgtttgat 31058099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 25381548 - 25381639
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  25381548 atttcataatacatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgaaatgtttgat 25381639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 44410156 - 44410065
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| | ||| | |||||||||||| ||||||||    
T  44410156 atttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgat 44410065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 24963685 - 24963806
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    |||| ||||||||| ||||||||||  || ||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||| |    
T  24963685 tgttgaaaatttagatcttaataaaaacagatttcataaaacatgttcaacgaatatgaatcaatagcggaagcaaacaaaacattgaacatgaatatga 24963784  T
Q  201 tcggatctacgacgtgtttgat 222  Q
     |||||||||| | ||||||||    
T  24963785 acggatctacgccatgtttgat 24963806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 31051687 - 31051599
Alignment:
Q  134 tcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||| |||||||||| |||  | |||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||    
T  31051687 tcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatgattggatctacgacatgtttgat 31051599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 12183568 - 12183688
Alignment:
Q  109 aaatttaggtcttaataaa--tcaatttcataaaacatgttcaa-----taattatgaatcaatagcggaagcaaccaaaacattgaacatgattataat 201  Q
    |||||||| ||||||||||  |  ||||||||||| ||||||||     ||||||||||||||||| |||||||| ||||| ||||||||| ||||| ||    
T  12183568 aaatttagttcttaataaaaatagatttcataaaatatgttcaacaatataattatgaatcaatagtggaagcaaacaaaatattgaacataattatgat 12183667  T
Q  202 cggatctacgacgtgtttgat 222  Q
     ||||||||||| ||||||||    
T  12183668 tggatctacgacatgtttgat 12183688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 38151988 - 38152052
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgat 195  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||||| ||||||||||||    
T  38151988 atttcataaaacatgttcaacaattattaatcaacagcggaagcaaacaaaatattgaacatgat 38152052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 8092862 - 8092950
Alignment:
Q  134 tcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||| |||| ||||| |||  | |||||||||| |||||||  |||||||||||||||||||| |||||||||| ||| ||||||||    
T  8092862 tcataatacatattcaacaatcgtaaatcaatagcagaagcaaataaaacattgaacatgattatgatcggatctatgacatgtttgat 8092950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 32035275 - 32035390
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  32035275 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 32035374  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  32035375 ctacgacatgtttgat 32035390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 8650816 - 8650907
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  8650816 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 8650907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 8662794 - 8662885
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  8662794 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 8662885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 21782736 - 21782857
Alignment:
Q  103 tgttaaaaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| ||||||||||||||||| || || ||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |    
T  21782736 tgttagaaatttaggtcttaatataaacagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 21782835  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    ||||||||||||| ||||||||    
T  21782836 tcggatctacgacatgtttgat 21782857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 4580310 - 4580425
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  4580310 aaatttaggtcttaatataaacagatttcataatacatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 4580409  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  4580410 ctacgacatgtttgat 4580425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 18778754 - 18778638
Alignment:
Q  109 aaatttaggtcttaat--aaatcaatttcataaaa-catgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  |||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||    
T  18778754 aaatttaggtcttaattaaaacaaatttcataaaaacatgttcaataattatgaatcaatagcggaagcaaacaaaacgttgaacataattatgatcgga 18778655  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||||| ||||||    
T  18778654 tctacgacgtatttgat 18778638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 31756202 - 31756318
Alignment:
Q  109 aaatttaggtcttaataaatcaa----tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgg 204  Q
    |||||||||||||||||||  ||    ||||||||||||||||||| ||||||||||||| | |||||||||  ||||||||||||||||||||||||||    
T  31756202 aaatttaggtcttaataaaaaaacagatttcataaaacatgttcaacaattatgaatcaacaacggaagcaaataaaacattgaacatgattataatcgg 31756301  T
Q  205 atctacgacgtgtttga 221  Q
    ||||||||| |||||||    
T  31756302 atctacgacatgtttga 31756318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 21190855 - 21190960
Alignment:
Q  109 aaatttaggtctta--ataaatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||  |||||   ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  21190855 aaatttaggtcttattataaacagatttcataaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 21190954  T
Q  207 ctacga 212  Q
    ||||||    
T  21190955 ctacga 21190960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 17581770 - 17581681
Alignment:
Q  133 ttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||    
T  17581770 ttcataaaacatgttcaactattatgaatcgatagcggaagcaaacaaaacattgaacatgattattataggatctacgacatgtttgat 17581681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 21197034 - 21197125
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| | ||| | ||||||||| || ||||||||    
T  21197034 atttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatgaacggatctacaacatgtttgat 21197125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 25354357 - 25354266
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| |||  | |||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||||||||    
T  25354357 atttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaagcattgaacatgattatgatcggatctacgacatgtttgat 25354266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 25343759 - 25343679
Alignment:
Q  142 catgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||  | |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||    
T  25343759 catgttcaacaatcgtaaatcaatagcagaagcaaacaaaacattgaacatgattatgatcggatctacgacatttttgat 25343679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 2281349 - 2281423
Alignment:
Q  28 ttttgggtaccggtgacaaaagtgtgttcggcaaacgatttccgtttcggctgatatttgagtttgttattgttgt 103  Q
    |||||||| | ||||||||||||||||| |||||||||| |||||||||||||| |||| ||| ||||||| ||||    
T  2281349 ttttgggttctggtgacaaaagtgtgtttggcaaacgatctccgtttcggctgaaattt-agtatgttatttttgt 2281423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 21783350 - 21783413
Alignment:
Q  159 aatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||| ||||||||||||||| | ||| | |||||||||||| ||||||||    
T  21783350 aatcaatagcggaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgat 21783413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 21789573 - 21789636
Alignment:
Q  159 aatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||| ||||||||||||||| | ||| | |||||||||||| ||||||||    
T  21789573 aatcaatagcggaagcaaacaaaacattgaacataaatatgaacggatctacgacatgtttgat 21789636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 6098128 - 6098035
Alignment:
Q  130 aatttcataaaacatgtt---caataattatgaatc-aatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||   ||| ||||||||||| ||||||||||| |  |||||||||||||||||  | || |||||||||||||||||||||    
T  6098128 aatttcataaaacatgttcaacaacaattatgaatcaaatagcggaagtagacaaaacattgaacatga--agaa-cggatctacgacgtgtttgat 6098035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 34603344 - 34603434
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||| |||||||||||  || |||||||||| |||||| ||||||| |||| |||||||||| ||||| |||||||||| | | ||||||||    
T  34603344 atttaataaaacatgtgtaacaattatgaataaatagc-gaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgat 34603434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 34724621 - 34724711
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||| |||||||||||  || |||||||||| |||||| ||||||| |||| |||||||||| ||||| |||||||||| | | ||||||||    
T  34724621 atttaataaaacatgtgtaacaattatgaataaatagc-gaagcaaacaaagcattgaacataattatgatcggatctatggcatgtttgat 34724711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 21770545 - 21770662
Alignment:
Q  108 aaaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgg 204  Q
    |||||||||||||||||  ||| || ||||||||| ||||| |||| |||  | ||| ||||| ||||| || ||||||||||||||| | ||| | |||    
T  21770545 aaaatttaggtcttaattaaaaacagatttcataatacatgatcaacaatcgtaaattaatagaggaagtaaacaaaacattgaacataaatatgaacgg 21770644  T
Q  205 atctacgacgtgtttgat 222  Q
    ||||||||| ||||||||    
T  21770645 atctacgacatgtttgat 21770662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 28682934 - 28683049
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  28682934 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 28683033  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  28683034 ctacgacatgtttgat 28683049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 35090638 - 35090753
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  35090638 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 35090737  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  35090738 ctacgacatgtttgat 35090753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 35084665 - 35084780
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  35084665 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggat 35084764  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  35084765 ctacgacatgtttgat 35084780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 36750561 - 36750470
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  36750561 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 36750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 35438699 - 35438813
Alignment:
Q  109 aaatttaggtcttaataaatcaa-tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatc 207  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  35438699 aaatttaggccttaataaaacaaatttcataaaacatgttcaacagttatgaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatc 35438798  T
Q  208 tacgacgtgtttgat 222  Q
    |||||| ||||||||    
T  35438799 tacgacatgtttgat 35438813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 13456270 - 13456155
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||| ||||||||||||  |||  ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  13456270 aaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggat 13456171  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  13456170 ctacgacatgtttgat 13456155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 13462211 - 13462096
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||| ||||||||||||  |||  ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  13462211 aaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggat 13462112  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  13462111 ctacgacatgtttgat 13462096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 13149675 - 13149790
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| |||  | |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  13149675 aaatttaggtcttaatataaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 13149774  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  13149775 ctacgacatgtttgat 13149790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 30965505 - 30965383
Alignment:
Q  103 tgttaaaaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattata 199  Q
    ||||| ||||||||||||||||  ||| || ||||||||| |||||||||| ||| || |||||||||||||||||| ||||| |||||||||||||||     
T  30965505 tgttagaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcataaatcaatagcggaagcaaacaaaatattgaacatgattatg 30965406  T
Q  200 atcggatctacgacgtgtttgat 222  Q
    |||||||||||||| ||||||||    
T  30965405 atcggatctacgacatgtttgat 30965383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 11048542 - 11048658
Alignment:
Q  109 aaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||| ||||  | ||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||    
T  11048542 aaatttaggtcttattaaaaataaatttcataaaacatgtccaacaattatgaatcaatagctgaagcaaacaaaacattgaacatgattatgattggat 11048641  T
Q  207 ctacgacgtgtttgatg 223  Q
     |||| | |||||||||    
T  11048642 atacgtcatgtttgatg 11048658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 31002548 - 31002432
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| |||||||||| |||  | |||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  31002548 aaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattatgatcgga 31002449  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  31002448 tctacgacatgtttgat 31002432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 31008526 - 31008410
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| |||||||||| |||  | |||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  31008526 aaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattatgatcgga 31008427  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  31008426 tctacgacatgtttgat 31008410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 44716787 - 44716909
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaacc-aaaacattgaacatgattata 199  Q
    ||||| |||||||||||||||||||  || || |||||||||||||||||   |||| ||||||||||||||||||   ||||||||||||||||||||     
T  44716787 tgttagaaatttaggtcttaataaaaacagatatcataaaacatgttcaacggttatcaatcaatagcggaagcaaaagaaaacattgaacatgattatg 44716886  T
Q  200 atcggatctacgacgtgtttgat 222  Q
    |||||||||||||| ||||||||    
T  44716887 atcggatctacgacatgtttgat 44716909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 23343707 - 23343616
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||  |||| ||||||| ||||||||||| ||||||||||||||||| ||| | || ||||||||| ||||||||    
T  23343707 atttcataaaacatgttcaacgattacgaatcaacagcggaagcaaacaaaacattgaacatgaatatgaacgaatctacgacatgtttgat 23343616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 1388035 - 1388090
Alignment:
Q  133 ttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaa 189  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||    
T  1388035 ttcataaaacat-ttcaataattatgaatcaataacggaaacaaacaaaacattgaa 1388090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 17929455 - 17929374
Alignment:
Q  16 agaggaagaaggttttgggtaccggtgacaaaagtgtgttcggcaaacgatttccgtttcggctgatatttgagtttgttatt 98  Q
    ||||||||||| ||| ||||| ||| ||||||||||||||||||||| || || ||||||  |||| |||||||| |||||||    
T  17929455 agaggaagaagcttt-gggtatcggcgacaaaagtgtgttcggcaaatgactttcgtttcatctgaaatttgagtatgttatt 17929374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 30051085 - 30051206
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30051085 tgttgaaaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattataa 30051184  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    || |||||||||| ||||||||    
T  30051185 tcagatctacgacatgtttgat 30051206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10244347 - 10244438
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  10244347 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 10244438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 49151782 - 49151667
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  49151782 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 49151683  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  49151682 ctacgacatgtttgat 49151667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 49157849 - 49157734
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  49157849 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 49157750  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  49157749 ctacgacatgtttgat 49157734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10238225 - 10238316
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||    
T  10238225 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcagatctacgacatgtttgat 10238316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 11839714 - 11839829
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11839714 aaatttaggtcttaatataaacagatttcatgatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 11839813  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  11839814 ctacgacatgtttgat 11839829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 17055807 - 17055897
Alignment:
Q  132 tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  17055807 tttcataaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 17055897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 8331957 - 8331842
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||| ||||||||  |||  |||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  8331957 aaatttagctcttaatataaatagattttataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 8331858  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  8331857 ctacgacatgtttgat 8331842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 55003401 - 55003513
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || |||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  55003401 aaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcagaagcaaataaaacattgaacatgattatgatcggat 55003500  T
Q  207 ctacgacgtgttt 219  Q
    ||||||| |||||    
T  55003501 ctacgacatgttt 55003513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 11846052 - 11846167
Alignment:
Q  109 aaatttaggtcttaat-aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||| ||| || |||| |||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11846052 aaatttaggtcttaattaaaacagattttataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 11846151  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  11846152 ctacgacatgtttgat 11846167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 38449054 - 38449167
Alignment:
Q  109 aaatttaggtcttaataaatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatct 208  Q
    |||||| |||||||||| |   ||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  38449054 aaatttcggtcttaatataaagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatct 38449153  T
Q  209 acgacgtgtttgat 222  Q
    || || ||||||||    
T  38449154 acaacatgtttgat 38449167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 38455541 - 38455654
Alignment:
Q  109 aaatttaggtcttaataaatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatct 208  Q
    |||||| |||||||||| |   ||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  38455541 aaatttcggtcttaatataaagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatct 38455640  T
Q  209 acgacgtgtttgat 222  Q
    || || ||||||||    
T  38455641 acaacatgtttgat 38455654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 42191209 - 42191324
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||| ||||||||||||  |||  ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  42191209 aaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggat 42191308  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  42191309 ctacgacatgtttgat 42191324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 42197151 - 42197266
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||| ||||||||||||  |||  ||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  42197151 aaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatgatcggat 42197250  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  42197251 ctacgacatgtttgat 42197266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 53069042 - 53069158
Alignment:
Q  108 aaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||||||  || |||| ||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  53069042 aaaatttaggtcttaataaaaacagattttataaaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatgatcgga 53069141  T
Q  206 tctacgacgtgtttgat 222  Q
    |||| ||| ||||||||    
T  53069142 tctatgacatgtttgat 53069158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 10760663 - 10760754
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  10760663 atttcataatacatgttcaacaattataaatcaatagcggaagcaaataaaacattgaacatgattatgatcggatctacgacatgtttgat 10760754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 28965036 - 28964923
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || |||||||||||||||||||| |||   ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  28965036 aaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaat---gaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgga 28964940  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  28964939 tctacgacatgtttgat 28964923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 48128060 - 48128151
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||| ||||||||    
T  48128060 atttcatgaaacatgttcaacaattatgaatcaatagcggaaacaaacaaaacattgaacatgattatgatcggttctacgacatgtttgat 48128151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 10766883 - 10766975
Alignment:
Q  130 aatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||| |||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||    
T  10766883 aatttcataatacatgttcaacaattataaatcaacagcggaagcaaacaaaacattgaacatgattatgaccggatctacgacatgtttgat 10766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 17593270 - 17593383
Alignment:
Q  109 aaatttaggtcttaat---aaatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||   ||||  ||||||||| | |||||||| |||  | ||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  17593270 aaatttaggtcttaattaaaaatatatttcataatagatgttcaacaatcgtaaatcaatcgcggaagcaaacaaaacattgaacatgattatgatcgga 17593369  T
Q  206 tctacgacgtgttt 219  Q
    |||||||| |||||    
T  17593370 tctacgacatgttt 17593383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 24643540 - 24643632
Alignment:
Q  109 aaatttaggtcttaataaatc-aatttc--ataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    ||||||||||||||||||| | || |||  ||||||||||||||| | |||||||||||||||||||| ||  ||||||||||||||||||||    
T  24643540 aaatttaggtcttaataaaacaaacttcatataaaacatgttcaacatttatgaatcaatagcggaagtaaataaaacattgaacatgattat 24643632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 46656830 - 46656739
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| ||  |||||||| || || ||||| |||||||||||||  ||||||||    
T  46656830 atttcataaaacatgttcaataaatatgaattaatagctgaagtaaataaaacattcaatataattatgatcggatctacgatatgtttgat 46656739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 34300609 - 34300552
Alignment:
Q  165 tagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||    
T  34300609 tagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatatttgat 34300552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 13445227 - 13445142
Alignment:
Q  103 tgttaaaaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacatt 186  Q
    ||||| |||||||||||| ||||||  |  |||| ||| ||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  13445227 tgttagaaatttaggtctaaataaaaatagatttgatagaacatgttcaacaattataaatcaatagcggaagcaaataaaacatt 13445142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 14799405 - 14799520
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||  ||  |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  14799405 aaatttaggtcttaatataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 14799504  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  14799505 ctacgacatgtttgat 14799520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 9935449 - 9935334
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  9935449 aaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaatatgattatgatcggat 9935350  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  9935349 ctacgacatgtttgat 9935334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 32891059 - 32890944
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  32891059 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 32890960  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  32890959 ctacgacatgtttgat 32890944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 32897183 - 32897068
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  32897183 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 32897084  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  32897083 ctacgacatgtttgat 32897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 42992992 - 42993108
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  42992992 aaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgga 42993091  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  42993092 tctacgacatgtttgat 42993108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 7771402 - 7771287
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  7771402 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 7771303  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  7771302 ctacgacatgtttgat 7771287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 5542149 - 5542264
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||| ||||||  |||  |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5542149 aaatttaggttttaatataaatagattttataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 5542248  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  5542249 ctacgacatgtttgat 5542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 14418108 - 14417996
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || |||||||||||||||||   ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  14418108 aaatttaggtcttaataaaaacagatttcataaaacatgtt---taactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 14418012  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  14418011 ctacgacatgtttgat 14417996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 36819141 - 36819026
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||  ||  ||| |||||| |||||||||| |||||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  36819141 aaatttaggtcttaatataaacaaatctcataatacatgttcaacaattatgaatcaatagtggaagcaaacaaaacattgaatatgattatgatcggat 36819042  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  36819041 ctacgacatgtttgat 36819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 24250278 - 24250171
Alignment:
Q  103 tgttaaaaatttaggtcttaataaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataat 201  Q
    |||| |||||||||||||||| ||| || ||||||||||||||||| || || |||||||||||||||||| ||| ||||| ||||||||| ||||| ||    
T  24250278 tgttgaaaatttaggtcttaaaaaaacatatttcataaaacatgttgaacaaatatgaatcaatagcggaaacaaacaaaatattgaacattattatgat 24250179  T
Q  202 cggatcta 209  Q
    ||||||||    
T  24250178 cggatcta 24250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 39727333 - 39727400
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  39727333 atttcataaaacatgttcaacaattatgaatcaataacggaagcaaacaaaacattgaacatgattat 39727400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 39735565 - 39735656
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||||||||||| || | ||||||||| ||||||||    
T  39735565 atttcataaaacatgttcaacaattatgaatcaatagcggaagtaaataaaatattgaacatgattatgattgtatctacgacatgtttgat 39735656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 1882740 - 1882843
Alignment:
Q  109 aaatttaggtcttaata--aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    |||||||||||||||||  || || |||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||| | ||||    
T  1882740 aaatttaggtcttaatataaaacagatttcatagaacatgttcaacaattaagaatcaatagcggaagcaaacaaaacattgaacatgaatatgaacgga 1882839  T
Q  206 tcta 209  Q
    ||||    
T  1882840 tcta 1882843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 22219729 - 22219821
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaag-caaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||||| ||||||||||||||| ||||  ||  ||||| |||||||||||||| |||||||||||||| ||||||||    
T  22219729 atttcataaaacatgttcaatagttatgaatcaatagcagaagaaaaagaaaactttgaacatgattatgatcggatctacgacatgtttgat 22219821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 31379434 - 31379504
Alignment:
Q  130 aatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    |||||||||| ||||||| |||||||||||||||||  |||| ||||  ||||||||||||||||||||||    
T  31379434 aatttcataacacatgtttaataattatgaatcaatgacggaggcaaataaaacattgaacatgattataa 31379504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 31399062 - 31399117
Alignment:
Q  143 atgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||    
T  31399062 atgttcaataattatgaatcaatagtggaggcaaacaatacattgaacatgattat 31399117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 1171492 - 1171414
Alignment:
Q  109 aaatttaggtcttaataaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacatt 186  Q
    ||||||||||||||||||| || ||||||| |||||| ||||| |||||||| ||||  |||||||||| |||||||||    
T  1171492 aaatttaggtcttaataaaacagatttcatgaaacatattcaacaattatgattcaaccgcggaagcaaacaaaacatt 1171414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 10706014 - 10705922
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    ||||||||||||||||  ||| || ||||||||| ||||||| || |||  | ||||||||||| |||||| |||||||||||||||||||||    
T  10706014 aaatttaggtcttaattaaaaacagatttcataatacatgtttaacaatcgtaaatcaatagcgtaagcaaacaaaacattgaacatgattat 10705922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 10700127 - 10700084
Alignment:
Q  179 aaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  10700127 aaaacattgaacatgattatgatcggatctacgacatgtttgat 10700084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 5681 - 5590
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  5681 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 5590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 339517 - 339426
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  339517 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 339426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 3817300 - 3817415
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  3817300 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 3817399  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  3817400 ctacgacatgtttgat 3817415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 351932 - 351841
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  351932 atttcataaaacatgttcaacaattatgaatcaacagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 351841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 3811182 - 3811273
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  3811182 atttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 3811273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 28420972 - 28421063
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  28420972 atttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 28421063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 20239121 - 20239006
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||  ||  ||||||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  20239121 aaatttaggtcttaatataaacaaatttcataaaacatgttcaacaatcatacatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 20239022  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  20239021 ctacgacatgtttgat 20239006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 42767283 - 42767399
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  42767283 aaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattatgatcgga 42767382  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| | ||||||    
T  42767383 tctacgacatatttgat 42767399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 12804170 - 12804055
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||  || | |||||    
T  12804170 aaatttaggtcttaataaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaagcaaaacattgaacatgaacatgaacggat 12804071  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  12804070 ctacgacatgtttgat 12804055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 35148017 - 35148108
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||||||    
T  35148017 atttcataaaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacacgtttgat 35148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 5849696 - 5849580
Alignment:
Q  109 aaatttaggtcttaataaatc--aatttcataaaac-atgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    |||||||||||||||||||    ||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | ||||    
T  5849696 aaatttaggtcttaataaaaacaaattttataaaattatgttcaatgattatgaatcaatagcggaagcaaccaaaacattgaacataaatatgaacgga 5849597  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  5849596 tctacgacatgtttgat 5849580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 43540131 - 43540040
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||| |||||||||||||||||||||||||||||||||  ||  |||| ||||||||||||||| ||||||||||| || ||||||||    
T  43540131 atttcatagaacatgttcaataattatgaatcaatagcggaattaaataaaatattgaacatgattatgatcggatctacaacatgtttgat 43540040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 36967032 - 36966958
Alignment:
Q  29 tttgggtaccggtgacaaaagtgtgttcggcaaacgatttccgtttcggctgatatttgagtttgttattgttgt 103  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||    
T  36967032 tttgggttccgatgacaaaagtgtgttcggcaaacgatctccgtttcggctgaaatttgagtatgttatttttgt 36966958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 30219269 - 30219350
Alignment:
Q  141 acatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||||| |||||||| ||| |||||| |||||||||| ||| | |||||||||||| ||||||||    
T  30219269 acatgttcaataattatgaatcattagcggaatcaaacaaaacgttgaacatgaatatgaacggatctacgacatgtttgat 30219350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 22741932 - 22742029
Alignment:
Q  132 tttcataaaacatgttcaataattatgaat-------caatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||| ||||||||||       ||||||||||||||| |  |||||||||||||||||| |||||||||||||| ||||||||    
T  22741932 tttcataaaacatgttcaacaattatgaatgaatcaacaatagcggaagcaaactgaacattgaacatgattatgatcggatctacgacatgtttgat 22742029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 26383772 - 26383681
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| ||||||||||||| | | ||| ||| ||||| |||||||||||| || |||||||||||||| ||||||||    
T  26383772 atttcataagacatgttcaacaattatgaatcaacaacagaaacaaacaaaatattgaacatgatcatgatcggatctacgacatgtttgat 26383681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 5979156 - 5979278
Alignment:
Q  103 tgttaaaaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattata 199  Q
    |||| |||||||||||||||||  ||| || ||||||||| ||||||| || |||  | ||||||||||| |||||| ||||  |||||||||||||||     
T  5979156 tgttgaaaatttaggtcttaattaaaaacagatttcataatacatgttgaacaatcgtaaatcaatagcgaaagcaaacaaactattgaacatgattatg 5979255  T
Q  200 atcggatctacgacgtgtttgat 222  Q
    || ||||||||||| ||||||||    
T  5979256 attggatctacgacatgtttgat 5979278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 26381238 - 26381136
Alignment:
Q  109 aaatttaggtcttaataaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatc 207  Q
    |||||||||||| ||||||  | ||||||||| |||||||||| |||||||||||||  | | || ||| || || |||||||||||| || ||| ||||    
T  26381238 aaatttaggtctaaataaaatagatttcataagacatgttcaacaattatgaatcaagggggaaaacaaacacaatattgaacatgatcatgatcagatc 26381139  T
Q  208 tac 210  Q
    |||    
T  26381138 tac 26381136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 2764854 - 2764818
Alignment:
Q  45 aaaagtgtgttcggcaaacgatttccgtttcggctga 81  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  2764854 aaaagtgtgttcggcaaacgatctccgttttggctga 2764818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 28525375 - 28525490
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  28525375 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 28525474  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  28525475 ctacgacatgtttgat 28525490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 28531471 - 28531586
Alignment:
Q  109 aaatttaggtcttaata-aatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    ||||||||||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  28531471 aaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 28531570  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  28531571 ctacgacatgtttgat 28531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 7389537 - 7389652
Alignment:
Q  109 aaatttaggtcttaata--aatcaatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||  ||  |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  7389537 aaatttaggtcttaatataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 7389636  T
Q  207 ctacgacgtgtttgat 222  Q
    | ||||| ||||||||    
T  7389637 ccacgacatgtttgat 7389652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 12686192 - 12686283
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  12686192 atttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 12686283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 12692294 - 12692385
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  12692294 atttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggatctacgacatgtttgat 12692385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 24054507 - 24054390
Alignment:
Q  107 aaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgg 204  Q
    |||| ||||||||||||||||  || |||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  24054507 aaaattttaggtcttaataaaaacagatttcataaaacatgttcaacaattataaatctatagcggaagcaaacaaaacattgaacatgattatgatcgg 24054408  T
Q  205 atctacgacgtgtttgat 222  Q
    ||||||||| ||||||||    
T  24054407 atctacgacatgtttgat 24054390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 41297423 - 41297332
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||    
T  41297423 atttcataatacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacataattatgatcggatctacgacatgtttgat 41297332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 14610327 - 14610204
Alignment:
Q  103 tgttaaaaatttaggtcttaataaatcaa----tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    ||||||||||||||||||||| |||  ||    ||||||||||||||||||| |||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  14610327 tgttaaaaatttaggtcttaacaaaaaaacagatttcataaaacatgttcaacaattatgaattaatagcggaagcaaataaaccattgaacatgattat 14610228  T
Q  199 aatcggatctacgacgtgtttgat 222  Q
     ||||||| |||||| ||||||||    
T  14610227 gatcggatttacgacatgtttgat 14610204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 30384391 - 30384469
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatcta 209  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  30384391 atttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacacgattatgatcggatcta 30384469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 16215157 - 16215278
Alignment:
Q  103 tgttaaaaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    ||||| ||||||||||||| |||||  || ||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |    
T  16215157 tgttagaaatttaggtctttataaaaacagatttcataacacatattcaacaattatgaatcaatagcggaagcaaacaaaacatttaacatgattatga 16215256  T
Q  201 tcggatctacgacgtgtttgat 222  Q
    | ||||||||||  ||||||||    
T  16215257 ttggatctacgaaatgtttgat 16215278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 32096949 - 32097065
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || ||||||||| |||||||||| |||  | |||||||||||||||||| ||||||||||||||||||||| || |||    
T  32096949 aaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatgatagga 32097048  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||| ||||||||    
T  32097049 tctacgacatgtttgat 32097065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 32094139 - 32094264
Alignment:
Q  100 ttgtgttaaaaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgatt 196  Q
    |||||||  ||||||||||||||||  ||| || |||| |||| |||||||||| |||  | |||||||||||||||||| |||||||||||||||||||    
T  32094139 ttgtgttggaaatttaggtcttaattaaaaacagattttataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgatt 32094238  T
Q  197 ataatcggatctacgacgtgtttgat 222  Q
    || || ||||||||||| ||||||||    
T  32094239 atgataggatctacgacatgtttgat 32094264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 30772454 - 30772338
Alignment:
Q  109 aaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaatcaatagcggaagc-aaccaaaacattgaacatgattataatcgga 205  Q
    |||||||| ||||||||||  | |||||||||||||||||||||||||||||||| || || |||||| ||| |||||| ||||||||||||| ||||||    
T  30772454 aaatttagttcttaataaaaataaatttcataaaacatgttcaataattatgaataaacagtggaagcaaacaaaaacaatgaacatgattatgatcgga 30772355  T
Q  206 tctacgacgtgtttgat 222  Q
    || || || ||||||||    
T  30772354 tcgacaacatgtttgat 30772338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 19059753 - 19059868
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || |||||||||||| | |||||  ||||| ||||| ||| |||||||| ||||| ||| ||||||| ||||| |||||    
T  19059753 aaatttaggtcttaataaaaacatatttcataaaacgtattcaacgattataaatcattaggggaagcaaacaaaatattaaacatgaatataaacggat 19059852  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  19059853 ctacgacatgtttgat 19059868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 19066120 - 19066211
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    |||||||||| |||||||||  ||||| ||||| |||||||||||| ||||||||| | ||||| ||| | |||||||||||| ||||||||    
T  19066120 atttcataaaccatgttcaacgattataaatcattagcggaagcaaacaaaacattaagcatgaatatgaacggatctacgacatgtttgat 19066211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 26316805 - 26316896
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||||||||| | ||| ||||| ||||||||  |||||||||||||| | ||| || ||||||| ||| ||||||||    
T  26316805 atttcataaaacatgttcaataattttaaattaatagtggaagcaaaaaaaacattgaacattaatatgattggatctaggacatgtttgat 26316896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 26509993 - 26509929
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    ||||||||||||||||||||| |||||||   ||||| |||||||| ||||||||||||||| |||||    
T  26509993 atttcataaaacatgttcaatcattatga---aatagtggaagcaaacaaaacattgaacataattat 26509929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 37896310 - 37896402
Alignment:
Q  130 aatttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||| ||| || |||||| ||||||||| ||| |||| ||  ||||  |||||||||||||| |||||||||||||| || |||||    
T  37896310 aatttcataaatcatatttaataatcatgaatcaacagcagaagtaaataaaatgttgaacatgattatgatcggatctacgacatgattgat 37896402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 8706448 - 8706508
Alignment:
Q  103 tgttaaaaatttaggtcttaataaa--tcaatttcataaaacatgttcaataattatgaat 161  Q
    ||||| |||||||||||||||||||  |  ||||||||||| |||||||| ||||||||||    
T  8706448 tgttataaatttaggtcttaataaaaatagatttcataaaatatgttcaacaattatgaat 8706508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 18937600 - 18937649
Alignment:
Q  39 ggtgacaaaagtgtgttcggcaaacgatttccgtttcggctgatatttga 88  Q
    |||||||||||||||||||||||| ||| |  ||||||||||| ||||||    
T  18937600 ggtgacaaaagtgtgttcggcaaatgatatttgtttcggctgaaatttga 18937649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 172873 - 172991
Alignment:
Q  103 tgttaaaaatttaggtcttaata-aatcaa-tttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataa 200  Q
    |||| |||||||||||||||||| || ||  ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||| |    
T  172873 tgttgaaaatttaggtcttaatataaacaggtttcataaaacatgttctacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatga 172972  T
Q  201 tcggatctacgacgtgttt 219  Q
    ||||||||||||| |||||    
T  172973 tcggatctacgacatgttt 172991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 1182 - 1298
Alignment:
Q  109 aaatttaggtcttaat--aaatca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcgga 205  Q
    ||||||||||||||||  ||| || |||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||| ||||||    
T  1182 aaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaattatgaatcaaaggcggaagcaaacaaaacattgaacatgattatgatcgga 1281  T
Q  206 tctacgacgtgtttgat 222  Q
    |||||||  ||||||||    
T  1282 tctacgatatgtttgat 1298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 611 - 723
Alignment:
Q  109 aaatttaggtcttaataaat-ca-atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||||||||||||||  || |||||||||||||||||   ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  611 aaatttaggtcttaataaaaacagatttcataaaacatgtt---taactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcggat 707  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  708 ctacgacatgtttgat 723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 6693 - 6602
Alignment:
Q  109 aaatttaggtcttaata-aatcaatttcataaaacatgttcaataatt-atgaatcaatagcggaagcaaccaaaacattgaacatgattat 198  Q
    |||||||| |||||||| || |||||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  6693 aaatttagctcttaatataaacaatttcataaaccatgttcaacaatttatgaatcaatagcggaagcaaacaaaacattgaacatgattat 6602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 12566 - 12451
Alignment:
Q  109 aaatttaggtcttaata-aatcaatttcataaaacatgttcaataatt-atgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggat 206  Q
    |||||||| |||||||| || |||||||||||| ||| ||||| |||| |||||||||||||||||||||  |||||||||||||| ||||| |||| ||    
T  12566 aaatttagctcttaatataaacaatttcataaaccatattcaacaatttatgaatcaatagcggaagcaaataaaacattgaacataattatgatcgaat 12467  T
Q  207 ctacgacgtgtttgat 222  Q
    ||||||| ||||||||    
T  12466 ctacgacatgtttgat 12451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 6061 - 5978
Alignment:
Q  139 aaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttgat 222  Q
    ||||||||||||||||||| |||||||||||| |  || ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  6061 aaacatgttcaataattattaatcaatagcggcattaaacaaaacattgaacatgaatatgatcggatctacgacatgtttgat 5978  T

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Target: scaffold0047 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 72976 - 73060
Alignment:
Q  10 gagcagagaggaagaaggttttgggtaccggtgacaaaagtgtgttcggcaaacgatttccgtttcggctgatatttgagtttgtt 95  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||| || ||||||||||| |||||||| ||||    
T  72976 gagcaaagaggaagaaggttttgggtacaagtgacaaaagtgtgttc-gcaaacgatctcggtttcggctgaaatttgagtatgtt 73060  T

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Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 38574 - 38485
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaaccaaaacattgaacatgattataatcggatctacgacgtgtttg 220  Q
    ||||||||| ||||||||||| ||||  |||||| || |||||||| |||||||||||||||  |||| ||||||||||| || ||||||    
T  38574 atttcataagacatgttcaatcattagaaatcaacagtggaagcaaacaaaacattgaacatagttatgatcggatctacaacatgtttg 38485  T

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Target: scaffold1114 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 1231 - 1186
Alignment:
Q  131 atttcataaaacatgttcaataattatgaatcaatagcggaagcaa 176  Q
    ||||||||||||||||||||  |||||||||||||| || ||||||    
T  1231 atttcataaaacatgttcaaccattatgaatcaatatcgaaagcaa 1186  T

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