View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3117_low_71 (Length: 235)

Name: NF3117_low_71
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3117_low_71
NF3117_low_71
[»] chr6 (57 HSPs)
chr6 (1-223)||(26885311-26885533)
chr6 (1-212)||(26657206-26657417)
chr6 (1-212)||(26763177-26763388)
chr6 (1-220)||(26647723-26647942)
chr6 (1-220)||(26753691-26753910)
chr6 (1-188)||(31285803-31285990)
chr6 (1-223)||(26803690-26803912)
chr6 (8-223)||(27426328-27426543)
chr6 (1-188)||(28787482-28787669)
chr6 (1-188)||(28793603-28793790)
chr6 (1-220)||(26624515-26624734)
chr6 (1-220)||(26730492-26730711)
chr6 (1-188)||(27603455-27603642)
chr6 (1-188)||(27609871-27610058)
chr6 (1-188)||(27697337-27697524)
chr6 (1-187)||(26825063-26825249)
chr6 (1-219)||(26862824-26863042)
chr6 (1-198)||(27717240-27717437)
chr6 (1-222)||(27704971-27705192)
chr6 (1-219)||(27680194-27680412)
chr6 (79-223)||(27215774-27215918)
chr6 (63-223)||(27530020-27530180)
chr6 (34-225)||(25492033-25492224)
chr6 (111-223)||(26057276-26057388)
chr6 (111-223)||(26077246-26077358)
chr6 (111-223)||(26144222-26144334)
chr6 (2-118)||(27336916-27337032)
chr6 (2-118)||(27397656-27397772)
chr6 (34-190)||(29827263-29827419)
chr6 (34-190)||(29842741-29842897)
chr6 (58-201)||(25484360-25484503)
chr6 (58-201)||(25512192-25512335)
chr6 (58-223)||(25581023-25581188)
chr6 (99-188)||(28296491-28296580)
chr6 (99-188)||(28515493-28515582)
chr6 (103-222)||(27676337-27676456)
chr6 (103-193)||(27591767-27591857)
chr6 (14-188)||(28186651-28186825)
chr6 (14-223)||(28326735-28326944)
chr6 (14-223)||(28504371-28504580)
chr6 (110-223)||(26938382-26938495)
chr6 (103-188)||(27663965-27664050)
chr6 (99-188)||(28182451-28182540)
chr6 (99-188)||(28244137-28244226)
chr6 (1-47)||(26812772-26812818)
chr6 (103-177)||(26978726-26978800)
chr6 (129-215)||(28097167-28097253)
chr6 (79-182)||(28240679-28240778)
chr6 (1-54)||(26849956-26850009)
chr6 (1-52)||(26636890-26636941)
chr6 (1-52)||(26742856-26742907)
chr6 (103-177)||(26960471-26960545)
chr6 (103-219)||(25075213-25075329)
chr6 (20-52)||(27664101-27664133)
chr6 (14-46)||(28182375-28182407)
chr6 (14-46)||(28296633-28296665)
chr6 (14-46)||(28515408-28515440)
[»] chr1 (5 HSPs)
chr1 (1-223)||(28126391-28126613)
chr1 (13-223)||(28132217-28132427)
chr1 (1-188)||(267091-267278)
chr1 (103-223)||(26137234-26137354)
chr1 (66-188)||(5922220-5922342)
[»] scaffold1870 (1 HSPs)
scaffold1870 (1-218)||(13-230)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-188)||(12426-12613)
scaffold0277 (1-188)||(3463-3650)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-218)||(8731-8948)
[»] chr8 (3 HSPs)
chr8 (1-222)||(29272555-29272776)
chr8 (79-178)||(35984621-35984720)
chr8 (160-223)||(12590144-12590207)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-223)||(60820-61035)
[»] chr4 (13 HSPs)
chr4 (8-223)||(18075012-18075227)
chr4 (1-221)||(18722799-18723019)
chr4 (103-221)||(18730218-18730336)
chr4 (103-221)||(18678274-18678392)
chr4 (103-219)||(18688342-18688458)
chr4 (103-221)||(18654191-18654309)
chr4 (103-193)||(18698142-18698232)
chr4 (1-47)||(18688514-18688560)
chr4 (1-46)||(18678449-18678494)
chr4 (22-188)||(5089701-5089867)
chr4 (1-47)||(18654365-18654411)
chr4 (1-47)||(18698288-18698334)
chr4 (1-47)||(18730392-18730438)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-198)||(2280-2477)
[»] chr2 (1 HSPs)
chr2 (77-190)||(3280979-3281092)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-146)||(57087-57219)
[»] scaffold0038 (2 HSPs)
scaffold0038 (99-188)||(44299-44388)
scaffold0038 (79-182)||(40841-40940)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-210)||(238594-238736)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 57)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26885311 - 26885533
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26885311 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaacatggaagagtacactagatggatatgaaaagattcctaatacaa 26885410  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26885411 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 26885510  T
Q  201 agaggtcgaagatatacttcatg 223  Q
    |||||||||||||||||||||||    
T  26885511 agaggtcgaagatatacttcatg 26885533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26657206 - 26657417
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||| ||    
T  26657206 cttcccttagttatagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaagattcccaataaaa 26657305  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||  |||||||| |||| || ||     
T  26657306 agattcaagagatacttaaagtaagctatgatgatttggaggaagaggagcaaagtgtctttttagatatagcttgttttttcaaaggatgtagattgag 26657405  T
Q  201 agaggtcgaaga 212  Q
     |||||||||||    
T  26657406 tgaggtcgaaga 26657417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26763177 - 26763388
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||| ||    
T  26763177 cttcccttagttatagaagtagtggcttcaaacttgtttggaaagagcatcgaaaaatggaagagtacattagatggatatgaaaagattcccaataaaa 26763276  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||  |||||||| |||| || ||     
T  26763277 agattcaagagatacttaaagtaagctatgatgatttggaggaagaggagcaaagtgtctttttagatatagcttgttttttcaaaggatgtagattgag 26763376  T
Q  201 agaggtcgaaga 212  Q
     |||||||||||    
T  26763377 tgaggtcgaaga 26763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26647723 - 26647942
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||| | ||||||||||||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  26647723 cttcccttagttttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 26647822  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || || ||||||||||||||||| |||| ||||      
T  26647823 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtagatggga 26647922  T
Q  201 agaggtcgaagatatacttc 220  Q
     ||| | |||||||||||||    
T  26647923 ggagtttgaagatatacttc 26647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26753691 - 26753910
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||| | ||||||||||||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  26753691 cttcccttagttttagaaatagtgggttccaacttatatggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 26753790  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || || ||||||||||||||||| |||| ||||      
T  26753791 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtagatggga 26753890  T
Q  201 agaggtcgaagatatacttc 220  Q
     ||| | |||||||||||||    
T  26753891 ggagtttgaagatatacttc 26753910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 31285803 - 31285990
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| |     
T  31285803 cttccattagttatagaagtagtgggttcaaacttgtttggaaagagcatagaaaaatggaagagtacattagatgggtatgacaagattcccaataaag 31285902  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||||||    
T  31285903 agatccaaaagatacttaaagtaagctatgatgctttggaagaagaggagcagagtgtctttctggacattgcttgttgcttcaaagg 31285990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26803690 - 26803912
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  26803690 cttcccttagttttagagatagtgggttccaacttgtttggaaagagcataaaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 26803789  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| || || ||||||||||||||||| |||  ||||      
T  26803790 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtggatggga 26803889  T
Q  201 agaggtcgaagatatacttcatg 223  Q
     ||| | ||||||||||||||||    
T  26803890 ggagtttgaagatatacttcatg 26803912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 27426543 - 27426328
Alignment:
Q  8 tagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatcca 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||  ||| |||| |||| ||||| | |||||||||||||| |||| | |||||||    
T  27426543 tagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatcca 27426444  T
Q  108 agagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtc 207  Q
    |   ||||||||||| ||||||||| |||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||  | |||||    
T  27426443 aagaatacttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtc 27426344  T
Q  208 gaagatatacttcatg 223  Q
     |||| ||||||||||    
T  27426343 aaagaaatacttcatg 27426328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28787482 - 28787669
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||  |||||||||||||||||||||| |||| ||    
T  28787482 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaa 28787581  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||| || || || ||||||||||||||    
T  28787582 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaagg 28787669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 28793603 - 28793790
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||  |||||||||||||||||||||| |||| ||    
T  28793603 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaa 28793702  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||| || || || ||||||||||||||    
T  28793703 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaagg 28793790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26624515 - 26624734
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||  |||| ||||||| ||||| | |||||| |||| |     
T  26624515 cttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacaggattcccaataaag 26624614  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||||||| ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||  ||||| |||  |||||     
T  26624615 agatccaaaagatacttaaagtgagctatgatgctttggaagaagaggagcagagtgtctttctagatattgcttgttgctcgaaaggatgtggatggag 26624714  T
Q  201 agaggtcgaagatatacttc 220  Q
     ||| |||||||||| ||||    
T  26624715 ggagttcgaagatatgcttc 26624734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26730492 - 26730711
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||  |||| ||||||| ||||| | |||||| |||| |     
T  26730492 cttccgttagttttagaaattgtgggttccaacttgtttggaaagagcatagaagaatggaagtatacattagatgggtatgacaggattcccaataaag 26730591  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||||||| ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||  ||||| |||  |||||     
T  26730592 agatccaaaagatacttaaagtgagctatgatgctttggaagaagaggagcagagtgtctttctagatattgcttgttgctcgaaaggatgtggatggag 26730691  T
Q  201 agaggtcgaagatatacttc 220  Q
     ||| |||||||||| ||||    
T  26730692 ggagttcgaagatatgcttc 26730711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 27603642 - 27603455
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| | ||| |||||||||||||||||||||||||||| ||||||  ||||||| ||||  |||| |||||||| |||||||| |||| ||    
T  27603642 cttcccttagttttggaagtagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacgttagaaggatatgagaagattcccaataaaa 27603543  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||||||||||||||    
T  27603542 agatccacgagattcttaaagtaagctatgatgctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaagg 27603455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 27610058 - 27609871
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||   |||||||  |||| ||||||| ||||| | |||||| |||| |     
T  27610058 cttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaggaatggaagtatacattagatgggtatgacaggattcccaataaag 27609959  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||| ||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  27609958 agatccaaaagatacttaaagtgagctatgattctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaagg 27609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 27697524 - 27697337
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||  |||||||  || | ||||||| ||||| | |||||| |||| |     
T  27697524 cttccgttagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaag 27697425  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||| ||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  27697424 agatccaaaagatacttagagtgagctatgatgctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaagg 27697337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 26825063 - 26825249
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||  ||||||||||||||||||| |||||||||||||||||| ||||||||||| || || ||||||||||||||| ||||||| | | ||    
T  26825063 cttcccttagtattagaaatagtgggttccaatttgtttggaaagagcatacaaatatggaagggtgcattagatggatatgaaaggattcctgacaaaa 26825162  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaag 187  Q
    |||||||||||||||||| |||||||||||||||||| || |||||| | |||||||| || || || || ||||||||||||||||    
T  26825163 agatccaagagatacttagagtaagctatgatgctttggaagaagagcaacaaagtgttttcctcgacattgcttgttgcttcaaag 26825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 26862824 - 26863042
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| | |||||||||||||| |||||||||||||||||||| |||  |||| |  | ||| ||||||| |||||||||||||| |||| |     
T  26862824 cttccgttagttctcgaaatagtgggttctaacttgtttggaaagagcatggaagaatggcaatgcacattagatgggtatgaaaagattcccaataaag 26862923  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||||  ||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||| |||||||| ||||||||| |||  ||||     
T  26862924 agatccaaaggatacttaaagtaagctatgatgctttggaagaagagcagcaaagtgtctttctagatattgcttgttgtttcaaagggggtagctggat 26863023  T
Q  201 agaggtcgaagatatactt 219  Q
    |||  ||||||||||||||    
T  26863024 agaattcgaagatatactt 26863042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 27717437 - 27717240
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||| ||||||   |||||||| |||| ||||||| ||||| | |||||| |||| |     
T  27717437 cttccgttagttatagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacaggattcccaataaag 27717338  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatgg 198  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| || || ||||||||||||||| | |||||||||    
T  27717337 agatccaaaagatacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttctagacattgcttgttgcttcaaaagatgtaaatgg 27717240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27705192 - 27704971
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| ||||| || ||||||| ||||||||||| |||| |||||||  |||||||| |||| ||||||| ||||| | |||||| |||| |     
T  27705192 cttccgttagttttagaagtaatgggttctaacttgtttggcaagaacatagaagaatggaagaatacattagatgggtatgacaggattcccaataaag 27705093  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||||||| ||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||| || || ||||||||||| ||||||| || || |||    
T  27705092 agatccaaaagatacttagagtgagctatgatgctttggaagaagaggagcagagtgtctttcttgacattgcttgttgcttaaaagggtatagattgac 27704993  T
Q  201 agaggtcgaagatatacttcat 222  Q
    |||||| ||| |||||||||||    
T  27704992 agaggttgaaaatatacttcat 27704971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 27680194 - 27680412
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||   ||||||  |||| ||||||| ||||| | |||||| |||| |     
T  27680194 cttccgttagttttagaagtagtgggttctaacttgtttggaaagagcatagaagattggaagcatacattagatgggtatgacaggattcccaataaag 27680293  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||||||| |||||||||| || |||||||||||||| || ||||||||||| ||||||||||| || || ||||| ||||||||||| | | ||||||     
T  27680294 agatccaaaagatacttaaggtgagctatgatgctttggaagaagaggagcagagtgtctttcttgacatcgcttgctgcttcaaaggatatcaatggaa 27680393  T
Q  201 agaggtcgaagatatactt 219  Q
     ||| ||||||||||||||    
T  27680394 ggagttcgaagatatactt 27680412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 27215774 - 27215918
Alignment:
Q  79 tatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgtt 178  Q
    |||||||||||||| |||| | ||||||||  |||||||||||| |||||||||||| | |||||| ||||| | ||||||||||| || || |||||||    
T  27215774 tatgaaaagattcccaataaagagatccaaaggatacttaaagtcagctatgatgctctggaggaaaaggagaagagtgtctttctagacattgcttgtt 27215873  T
Q  179 gcttcaaagggtgtaaatggacagaggtcgaagatatacttcatg 223  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  27215874 gcttcaaagggtgtaaatggacaaaggtcaaagatatacttcatg 27215918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 27530180 - 27530020
Alignment:
Q  63 gagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtcttt 162  Q
    ||||||| ||||||| |||||| | ||||| |||| | ||||||||   ||||||||||| ||||||||| |||| ||| |||| |||||||||||||||    
T  27530180 gagtacattagatgggtatgaagaaattcccaataaagagatccaaagaatacttaaagtgagctatgattctttggagaaagaagagcaaagtgtcttt 27530081  T
Q  163 ctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatatacttcatg 223  Q
    || || || ||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  27530080 ctagacattgcttgttgcttcaaagggtgtaaatggccagaggtcaaagaaatacttcatg 27530020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 25492224 - 25492033
Alignment:
Q  34 ttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatg 133  Q
    ||||||||||| |||||||||  ||||||| ||||| ||||||  ||||||||||||   |||| | |||||||| ||||||||| ||| ||||||||||    
T  25492224 ttgtttggaaatagcatagaagaatggaagtgtacattagatgagtatgaaaagattttcaataaagagatccaaaagatacttagagtgagctatgatg 25492125  T
Q  134 ctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatatacttcatgat 225  Q
    |||| |||||| ||||||| ||| ||||||| || ||  |||||| ||||||||| || |||||| | || ||| || ||||||||||||||    
T  25492124 ctttggaggaaaaggagcagagtatctttctagacatgacttgtttcttcaaaggttggaaatgggcggatgtcaaaaatatacttcatgat 25492033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 26057276 - 26057388
Alignment:
Q  111 gatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaa 210  Q
    ||||||| |||||||||||||||||||  ||||| |||| || ||||||||||| || || |||||||||||||||||||||||||||||| ||||  ||    
T  26057276 gatacttcaagtaagctatgatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaa 26057375  T
Q  211 gatatacttcatg 223  Q
     | ||||||||||    
T  26057376 aaaatacttcatg 26057388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 26077246 - 26077358
Alignment:
Q  111 gatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaa 210  Q
    ||||||| |||||||||||||||||||  ||||| |||| || ||||||||||| || || |||||||||||||||||||||||||||||| ||||  ||    
T  26077246 gatacttcaagtaagctatgatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaa 26077345  T
Q  211 gatatacttcatg 223  Q
     | ||||||||||    
T  26077346 aaaatacttcatg 26077358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 26144222 - 26144334
Alignment:
Q  111 gatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaa 210  Q
    ||||||| |||||||||||||||||||  ||||| |||| || ||||||||||| || || ||||||||||||||||||||| |||||||| ||||  ||    
T  26144222 gatacttcaagtaagctatgatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtgaatggacaaaggttaaa 26144321  T
Q  211 gatatacttcatg 223  Q
     | ||||||||||    
T  26144322 aaaatacttcatg 26144334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 27337032 - 27336916
Alignment:
Q  2 ttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaa 101  Q
    |||| |||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||  ||| ||||||| ||||| | |||||| |||| | |    
T  27337032 ttcccttagttttagaaatagtgggttctaacttgtttggaaagaacatagaagtatggaagaacacattagatgggtatgacaggattcccaataaaga 27336933  T
Q  102 gatccaagagatactta 118  Q
    ||| ||| |||||||||    
T  27336932 gatacaaaagatactta 27336916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 27397772 - 27397656
Alignment:
Q  2 ttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaa 101  Q
    |||| |||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||  ||| ||||||| ||||| | |||||| |||| | |    
T  27397772 ttcccttagttttagaaatagtgggttctaacttgtttggaaagaacatagaagtatggaagaacacattagatgggtatgacaggattcccaataaaga 27397673  T
Q  102 gatccaagagatactta 118  Q
    ||| ||| |||||||||    
T  27397672 gatacaaaagatactta 27397656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 29827263 - 29827419
Alignment:
Q  34 ttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatg 133  Q
    |||||||||||||  ||||||  ||||||   || | ||||| ||||||||| ||||||||||| | |||||||| | ||||||||| |||| | |||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  134 ctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggt 190  Q
    |||| |||||||| || ||| |||| ||||| || || |||||||||||||||||||    
T  29827363 ctttggaggaagatgaacaaggtgtttttctcgacattgcttgttgcttcaaagggt 29827419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 29842897 - 29842741
Alignment:
Q  34 ttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatg 133  Q
    |||||||||||||  ||||||  ||||||   |||| ||||| | ||||||| ||||||||||| | |||||||  | ||||||||| |||||| |||||    
T  29842897 ttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatg 29842798  T
Q  134 ctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggt 190  Q
    |||| |||||||| || ||| |||| ||||| || || |||||||||||||||||||    
T  29842797 ctttggaggaagacgaacaaggtgtttttctcgacattgcttgttgcttcaaagggt 29842741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 25484360 - 25484503
Alignment:
Q  58 tggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtg 157  Q
    |||||| ||||| ||||||  |||||||| |||||  ||| | | ||||||  ||||||| |||||||||||||||||||  ||||| |||| || ||||    
T  25484360 tggaagcgtacattagatgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagctatgatgctttgaaggaaaaggatcagagtg 25484459  T
Q  158 tctttctggatatagcttgttgcttcaaagggtgtaaatggaca 201  Q
    ||||||| || || ||||||| ||||||||||| ||||||||||    
T  25484460 tctttctagacattgcttgttacttcaaagggtataaatggaca 25484503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 25512192 - 25512335
Alignment:
Q  58 tggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtg 157  Q
    |||||| ||||| ||||||  |||||||| |||||  ||| | | ||||||  ||||||| |||||||||||||||||||  ||||| |||| || ||||    
T  25512192 tggaagcgtacattagatgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagctatgatgctttgaaggaaaaggatcagagtg 25512291  T
Q  158 tctttctggatatagcttgttgcttcaaagggtgtaaatggaca 201  Q
    ||||||| || || ||||||| ||||||||||| ||||||||||    
T  25512292 tctttctagacattgcttgttacttcaaagggtataaatggaca 25512335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 25581023 - 25581188
Alignment:
Q  58 tggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtg 157  Q
    |||||| ||| | ||||||  |||||||| ||||| |||| | | ||||||  ||||||| |||| |||||||||||||| ||   | ||||| | ||||    
T  25581023 tggaagcgtatattagatgagtatgaaaatattcccaataaagatatccaaaggatacttcaagttagctatgatgctttggaaccaaaggagaagagtg 25581122  T
Q  158 tctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatatacttcatg 223  Q
    ||||||| || || |||||||||||||||||||||||||||||| ||||  || | ||||||||||    
T  25581123 tctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaaaaaatacttcatg 25581188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 28296580 - 28296491
Alignment:
Q  99 aaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||| ||| ||||| || || ||||| |||||||||||    
T  28296580 aaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaagg 28296491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 28515493 - 28515582
Alignment:
Q  99 aaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||| ||| ||||| || || ||||| |||||||||||    
T  28515493 aaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaagg 28515582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 27676456 - 27676337
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| ||||||||| | | |||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||| ||||||| |||| || |  ||    
T  27676456 atccaaaagatacttagactgagctatgatgctttggacgaagaggagcagagtgtctttttggatattgcttgttgcatcaaaggatgtagattggaag 27676357  T
Q  203 aggtcgaagatatacttcat 222  Q
    | |||||| | |||||||||    
T  27676356 aagtcgaacagatacttcat 27676337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 27591857 - 27591767
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgta 193  Q
    |||||| ||||||||| | | |||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||| ||||||| ||||    
T  27591857 atccaaaagatacttagactcagctatgatgctttggaagaagaggagcagagtgtctttttggatattgcttgttgcatcaaaggatgta 27591767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 28186651 - 28186825
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagat 113  Q
    ||||| |||||||||||||||||||||||||||  |||| |  ||||||   | || || ||   ||||||| ||||||  ||| |||||||||||||||    
T  28186651 tagaagtagtgggttccaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccgataaaaagatccaagagat 28186750  T
Q  114 acttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||| |||||||||| ||||||||| | |||||  || |||| ||| ||||| || || ||||| |||||||||||    
T  28186751 actcaaagtaagctttgatgctttgggggaagcagaacaaaatgtttttctcgacatcgcttgctgcttcaaagg 28186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 28326735 - 28326944
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagat 113  Q
    ||||| |||||||||||||||||||||||||||  |||| |  ||| ||   | || || ||   ||||||| |||||| | || ||||||||||| |||    
T  28326735 tagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcgat 28326834  T
Q  114 acttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagat 213  Q
    |||||||||||||| ||||||||| || ||||| ||||| | ||| ||||| || || ||||| |||||||| || | | ||| || |||  | ||||||    
T  28326835 acttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaatggatatgaattgaaagaacttgaagat 28326934  T
Q  214 atacttcatg 223  Q
    ||||||||||    
T  28326935 atacttcatg 28326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 28504371 - 28504580
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagat 113  Q
    ||||| |||||||||||||||||||||||||||  |||| |  ||| ||   | || || ||   ||||||| |||||| | || ||||||||||| |||    
T  28504371 tagaagtagtgggttccaacttgtttggaaagaatatagtagaatgtaaatctgcattatatcagtatgaaaggattcccattaaaaagatccaagcgat 28504470  T
Q  114 acttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagat 213  Q
    |||||||||||||| ||||||||| || ||||| ||||| | ||| ||||| || || ||||| |||||||| || | | ||| || |||  | ||||||    
T  28504471 acttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaatggatatgaattgaaagaacttgaagat 28504570  T
Q  214 atacttcatg 223  Q
    ||||||||||    
T  28504571 atacttcatg 28504580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 26938382 - 26938495
Alignment:
Q  110 agatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcga 209  Q
    ||||||||| |||||||| ||||  ||| || ||||| || ||||||||||||||||||||  | ||||||||||| ||||||| || | | ||||| ||    
T  26938382 agatacttagagtaagctttgattgtttggatgaagaagaacaaagtgtctttctggatattacgtgttgcttcaatgggtgtagattggctgaggttga 26938481  T
Q  210 agatatacttcatg 223  Q
    ||||| ||||||||    
T  26938482 agataaacttcatg 26938495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 27664050 - 27663965
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||| |||||||||||||||||| |||| |||| || |||||  | || ||||||||| ||||||| |||||||||||||||||    
T  27664050 atccaaaagatacttaaagtaagctttgatactttggaagaagaacaacagagtgtctttttggatattgcttgttgcttcaaagg 27663965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 28182451 - 28182540
Alignment:
Q  99 aaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||||||||||||||||||| |||||||||||| | ||||| || ||||| | ||| |||||||| ||  |||||| ||| |||||    
T  28182451 aaagatccaagagatacttaaagttagctatgatgctctggaggatgatgagcagaatgtttttctggacatttcttgtttcttaaaagg 28182540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 28244137 - 28244226
Alignment:
Q  99 aaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||| || ||||||||||||||||||| ||||||||| ||| |||| ||||| | ||| ||||| || || ||||| |||||||||||    
T  28244137 aaagatacaggagatacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaagg 28244226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26812772 - 26812818
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagag 47  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  26812772 cttccattagctatagaagtagtgggttccaacttgtttggaaagag 26812818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 26978726 - 26978800
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgt 177  Q
    |||||| |||||||||||||||||| ||||||||| || |||||  | || ||||||||| ||||||| ||||||    
T  26978726 atccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacagagtgtctttttggatattgcttgt 26978800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 28097253 - 28097167
Alignment:
Q  129 tgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatat 215  Q
    ||||||||| |||||||| |||   ||||| ||||| || || ||||||||||||||||||| ||||| || |||||| ||||||||    
T  28097253 tgatgctttggaggaagatgagaggagtgtttttctcgacattgcttgttgcttcaaagggtataaattgaaagaggtggaagatat 28097167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 28240679 - 28240778
Alignment:
Q  79 tatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgtt 178  Q
    ||||||| |||||| |||| | |||||||| |||||||||||||    | ||||||||| ||| |||| ||||||||||| ||||| || || |||||||    
T  28240679 tatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcgacattgcttgtt 28240774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26849956 - 26850009
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaa 54  Q
    ||||| |||| | ||||| |||||||||||||||||||||||||||| ||||||    
T  26849956 cttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagaa 26850009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26636890 - 26636941
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatag 52  Q
    ||||| |||| | ||||| |||||||||||||||||||||||||||| ||||    
T  26636890 cttccattagctttagaagtagtgggttccaacttgtttggaaagagtatag 26636941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26742856 - 26742907
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatag 52  Q
    ||||| |||| | ||||| |||||||||||||||||||||||||||| ||||    
T  26742856 cttccattagctttagaagtagtgggttccaacttgtttggaaagagtatag 26742907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 26960471 - 26960545
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgt 177  Q
    |||||| |||||||||||||||||||||| ||||| |  |||||  | || ||||||||| ||||||| ||||||    
T  26960471 atccaaaagatacttaaagtaagctatgacgctttggctgaagaacaacagagtgtctttttggatattgcttgt 26960545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 25075213 - 25075329
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| | |||||||||||||||| ||| ||||| || |||||  | || ||||||||| ||||||| ||||||| ||| ||  ||||| ||| | ||     
T  25075213 atccaaaaaatacttaaagtaagctttgacgctttggacgaagaacaacagagtgtctttttggatattgcttgtttctttaattggtgtgaatcggcat 25075312  T
Q  203 aggtcgaagatatactt 219  Q
    | |||||||| ||||||    
T  25075313 atgtcgaagagatactt 25075329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 27664133 - 27664101
Alignment:
Q  20 tagtgggttccaacttgtttggaaagagcatag 52  Q
    |||||||||||||||||||||||||||| ||||    
T  27664133 tagtgggttccaacttgtttggaaagagtatag 27664101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 28182375 - 28182407
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaaga 46  Q
    ||||| |||||||||||||||||||||||||||    
T  28182375 tagaagtagtgggttccaacttgtttggaaaga 28182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 28296665 - 28296633
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaaga 46  Q
    ||||| |||||||||||||||||||||||||||    
T  28296665 tagaagtagtgggttccaacttgtttggaaaga 28296633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 28515408 - 28515440
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaaga 46  Q
    ||||| |||||||||||||||||||||||||||    
T  28515408 tagaagtagtgggttccaacttgtttggaaaga 28515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28126613 - 28126391
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  28126613 cttcccttagttatagaaatagtgggttccaacttatttggaaagagcatagaagaatggaagggtacattagatggatatgaaaagattccaaataaaa 28126514  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||| || || |||    
T  28126513 agatccaagagatatttaaactaagctatgatgctttggaggaagatgagcaaagtgtctttctcgatatagcttgctgcttcaaagggtatagattgac 28126414  T
Q  201 agaggtcgaagatatacttcatg 223  Q
    |||||| ||| | ||||||||||    
T  28126413 agaggttgaaaagatacttcatg 28126391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 28132427 - 28132217
Alignment:
Q  13 atagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagaga 112  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  28132427 atagaaatagtgggttcaaacttatttggaaagagcatagaagaatggaagtgtacattagatggatatgaaaagattcctaataaaaagatccatgaga 28132328  T
Q  113 tacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaaga 212  Q
    || |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||  |||||||||    
T  28132327 tatttaaagtaagttacgatgctttggaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaggggtatagattgacaatggtcgaaga 28132228  T
Q  213 tatacttcatg 223  Q
     ||||||||||    
T  28132227 gatacttcatg 28132217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 267278 - 267091
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||  ||||||| ||||| ||||||| ||||| |||||||| |||| |     
T  267278 cttccgttagttttagaaattgtgggttctaacttgtttggaaagagcatagaagaatggaagggtacattagatgggtatgataagattcccaataaag 267179  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||| ||||||||||||| |||||||||| ||| || ||||||||||| ||||||||| | || || |||||||||||||||||    
T  267178 agatccaaaagatacttaaagtgagctatgatggtttggaagaagaggagcagagtgtctttttagacattgcttgttgcttcaaagg 267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 26137234 - 26137354
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| | ||||||| |||||||||||||||||| || |||||  | |||||||| ||| ||||||| ||||||||||||||||||||||||| |||||    
T  26137234 atccaaaacatacttagagtaagctatgatgctttggacgaagaacaacaaagtgtatttttggatattgcttgttgcttcaaagggtgtaaattgacag 26137333  T
Q  203 aggtcgaagatatacttcatg 223  Q
    | ||| || | ||||||||||    
T  26137334 aagtccaaaagatacttcatg 26137354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 5922342 - 5922220
Alignment:
Q  66 tacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctg 165  Q
    |||| ||||| | ||||||| ||||||| ||| |||||| |||  | | || ||||| |||| ||||||||| || ||||| ||| ||||||| |||||     
T  5922342 tacattagatcgttatgaaaggattcctgataaaaagatgcaaacgttgctaaaagtgagctttgatgctttggaagaagaagagaaaagtgtttttctt 5922243  T
Q  166 gatatagcttgttgcttcaaagg 188  Q
    ||||| |||||||||||||||||    
T  5922242 gatattgcttgttgcttcaaagg 5922220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13 - 230
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  13 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 112  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || || |||||||||||||| |||  |||||     
T  113 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatggaa 212  T
Q  201 agaggtcgaagatatact 218  Q
     ||| | |||||||||||    
T  213 ggagtttgaagatatact 230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 12613 - 12426
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  12613 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 12514  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || || ||||||||||||||    
T  12513 agatccacgagatacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaagg 12426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 3650 - 3463
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  3650 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 3551  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || || ||||||||||||||    
T  3550 agatccaccagatacttaaagtaagctatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaagg 3463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8731 - 8948
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  8731 cttcccttagttttagaaatagtgggttccaacttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 8830  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||| || || || |||||||||||||| |||  |||||     
T  8831 agatccacgagatacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatggaa 8930  T
Q  201 agaggtcgaagatatact 218  Q
     ||| | |||||||||||    
T  8931 ggagtttgaagatatact 8948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29272776 - 29272555
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||| |||||||||||||||||||||| |||| ||    
T  29272776 cttcccttagttttagaaatagtgggttccaacttgtttggaaagaggatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaa 29272677  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
     ||||||  |||||||||||||||| ||||||||||| || |||||| | ||||||||||||||||| || ||||||||||||||||| ||| |||||      
T  29272676 ggatccaccagatacttaaagtaagttatgatgctttggaagaagagcaacaaagtgtctttctggacattgcttgttgcttcaaaggttgtgaatggga 29272577  T
Q  201 agaggtcgaagatatacttcat 222  Q
    ||| | | || |||||||||||    
T  29272576 agatgccaaatatatacttcat 29272555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 35984621 - 35984720
Alignment:
Q  79 tatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgtt 178  Q
    |||||||  |||||||||| | | |||||| |||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| || || |||||||    
T  35984621 tatgaaaccattcctaataaagacatccaaaagatacttaaagtaagttttgatgctttagaggaagatgagcaaagtgtttttcttgacattgcttgtt 35984720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 12590144 - 12590207
Alignment:
Q  160 tttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatatacttcatg 223  Q
    ||||| ||||| ||||||||||||||||| || |||| ||||  ||||||||| ||||||||||    
T  12590144 tttcttgatattgcttgttgcttcaaaggatggaaattgacaagggtcgaagaaatacttcatg 12590207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 60820 - 61035
Alignment:
Q  8 tagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatcca 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||  ||| |||| |||| ||||| | |||||||||||||| |||| | |||||||    
T  60820 tagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatcca 60919  T
Q  108 agagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtc 207  Q
    |   ||||||||||| ||||||||| |||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||  | |||||    
T  60920 aagaatacttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtc 61019  T
Q  208 gaagatatacttcatg 223  Q
     |||| ||||||||||    
T  61020 aaagaaatacttcatg 61035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 18075012 - 18075227
Alignment:
Q  8 tagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatcca 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||  ||| |||| |||| ||||| | |||||||||||||| |||| | |||||||    
T  18075012 tagttatagaaatagtgggttctaacttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatcca 18075111  T
Q  108 agagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtc 207  Q
    |   ||||||||||| ||||||||| |||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||  | |||||    
T  18075112 aagaatacttaaagtgagctatgattctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtc 18075211  T
Q  208 gaagatatacttcatg 223  Q
     |||| ||||||||||    
T  18075212 aaagaaatacttcatg 18075227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18723019 - 18722799
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||| || | |  |||  ||  |||| |||||   |||||||  |||||  ||  |     
T  18723019 cttccattagctatagaagtagtgggttccaacttgtttggaaagagtattgcagaatgtgagtctacattagatatgtatgaaagaattccagatgaag 18722920  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggac 200  Q
    | |||||| |||||||||||||||||| ||||||||| |  |||||  | |||||||||||| ||||||| ||||||| ||||||||| |||| || | |    
T  18722919 atatccaaaagatacttaaagtaagctttgatgctttgggcgaagaacaacaaagtgtctttttggatattgcttgtttcttcaaaggatgtagattggc 18722820  T
Q  201 agaggtcgaagatatacttca 221  Q
    ||| |||||||| ||||||||    
T  18722819 agaagtcgaagagatacttca 18722799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 18730336 - 18730218
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| |||||||||||||||||| ||||||||| || |||||  | |||||||||||| ||||||| ||||||| ||||||||| |||| || | |||    
T  18730336 atccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttggatattgcttgtttcttcaaaggatgtagattggcag 18730237  T
Q  203 aggtcgaagatatacttca 221  Q
    | |||||||| ||||||||    
T  18730236 aagtcgaagagatacttca 18730218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 18678392 - 18678274
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| |||||||||||||||||| ||||||||| || |||||  | |||| ||||||| ||||||| ||||||| ||||||||| |||| || | |||    
T  18678392 atccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaattgtctttttggatattgcttgtttcttcaaaggatgtagattggcag 18678293  T
Q  203 aggtcgaagatatacttca 221  Q
    | |||||||| ||||||||    
T  18678292 aagtcgaagagatacttca 18678274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 18688458 - 18688342
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| |||||||||||||||||| ||||||||| || |||||  | |||||||||||| ||||||| ||||||| ||||||||| |||| || | ||     
T  18688458 atccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttggatattgcttgtttcttcaaaggatgtatattggcaa 18688359  T
Q  203 aggtcgaagatatactt 219  Q
    | |||||||| ||||||    
T  18688358 aagtcgaagagatactt 18688342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 18654309 - 18654191
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatggacag 202  Q
    |||||| |||||||||||||||| | ||||||||| || |||||  | |||||||||||| ||||||| |||||||  |||||||| |||| || | |||    
T  18654309 atccaaaagatacttaaagtaagttttgatgctttggatgaagaacaacaaagtgtctttttggatattgcttgtttgttcaaaggatgtagattggcag 18654210  T
Q  203 aggtcgaagatatacttca 221  Q
    | |||||||| ||||||||    
T  18654209 aagtcgaagagatacttca 18654191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 18698232 - 18698142
Alignment:
Q  103 atccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgta 193  Q
    |||||| |||||||||||||||||| ||||||||| || |||||  | |||||||||||| ||||||| ||||||| ||||||||| ||||    
T  18698232 atccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttggatattgcttgtttcttcaaaggatgta 18698142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18688560 - 18688514
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagag 47  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  18688560 cttccattagctatagaagtagtgggttccaacttgtttggaaagag 18688514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18678494 - 18678449
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaaga 46  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||||    
T  18678494 cttccattagctatagaagtagtgggttccaacttgtttggaaaga 18678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 5089867 - 5089701
Alignment:
Q  22 gtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaag 121  Q
    ||||||||||| ||||||||||||   ||||||| ||||||   |  ||||||||  ||||||| ||||||||||| | | |||||| ||||||||| ||    
T  5089867 gtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatgaaaggattcctaataaagaaatccaaaagatacttatag 5089768  T
Q  122 taagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    | |||| | ||  |||||  ||| | ||||| ||||| || || || || |||||||| ||||||||    
T  5089767 tgagctttaataatttaggtgaatatgagcagagtgttttcctcgacattgcttgttgtttcaaagg 5089701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18654411 - 18654365
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagag 47  Q
    ||||| |||| ||||||| | ||||||||||||||||||||||||||    
T  18654411 cttccattagctatagaagtcgtgggttccaacttgtttggaaagag 18654365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18698334 - 18698288
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagag 47  Q
    ||||| |||| | ||||| ||||||||||||||||||||||||||||    
T  18698334 cttccattagctctagaagtagtgggttccaacttgtttggaaagag 18698288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18730438 - 18730392
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagag 47  Q
    ||||| |||| | ||||| ||||||||||||||||||||||||||||    
T  18730438 cttccattagctctagaagtagtgggttccaacttgtttggaaagag 18730392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 2477 - 2280
Alignment:
Q  1 cttcctttagttatagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaa 100  Q
    ||||| ||||||||||||||||||||||| ||||| | |||||||| ||||||   |||||||| |||| ||||||| ||||| | |||||| |||| |     
T  2477 cttccgttagttatagaaatagtgggttctaacttatctggaaagaacatagaggaatggaagaatacattagatgggtatgacaggattcccaataaag 2378  T
Q  101 agatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagggtgtaaatgg 198  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| || || ||||||||||||||| | |||||||||    
T  2377 agatccaaaagatacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttctagacattgcttgttgcttcaaaagatgtaaatgg 2280  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 3280979 - 3281092
Alignment:
Q  77 gatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttg 176  Q
    ||||||||| ||||||||||| | |||| ||  ||||||||||||| || | ||||||||| |||||||| ||||||||||| ||||| || || |||||    
T  3280979 gatatgaaaggattcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaagacgagcaaagtgtttttctcgacattgcttg 3281078  T
Q  177 ttgcttcaaagggt 190  Q
    |||||| |||||||    
T  3281079 ttgctttaaagggt 3281092  T

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Target: scaffold0019 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 57219 - 57087
Alignment:
Q  14 tagaaatagtgggttccaacttgtttggaaagagcatagaaatatggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagat 113  Q
    ||||| |||||||||| ||||||||||||||||  |||| |  ||||||   | || || ||   ||||||| |||||| | || |||||||||||||||    
T  57219 tagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaaaaagatccaagagat 57120  T
Q  114 acttaaagtaagctatgatgctttagaggaaga 146  Q
    |||||||||||||| ||||||||| ||||||||    
T  57119 acttaaagtaagctttgatgctttggaggaaga 57087  T

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Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 44299 - 44388
Alignment:
Q  99 aaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgttgcttcaaagg 188  Q
    |||||| || ||||||||||||||||||| ||||||||| ||| |||| ||||| | ||| ||||| || || ||||| |||||||||||    
T  44299 aaagatacaggagatacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaagg 44388  T

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Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 40841 - 40940
Alignment:
Q  79 tatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctggatatagcttgtt 178  Q
    ||||||| |||||| |||| | |||||||| |||||||||||||    | ||||||||| ||| |||| ||||||||||| ||||| || || |||||||    
T  40841 tatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcgacattgcttgtt 40936  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 238736 - 238594
Alignment:
Q  68 cactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtgtctttctgga 167  Q
    |||||||| | | ||||||  ||||| ||| ||||||||||  || |||  || ||||||||||||||||| ||||||| ||| ||| ||| ||||| ||    
T  238736 cactagatcgttttgaaaaagttcctcataaaaagatccaaatgacactacaactaagctatgatgctttacaggaagaagagaaaattgtttttcttga 238637  T
Q  168 tatagcttgttgcttcaaagggtgtaaatggacagaggtcgaa 210  Q
     || || |||||||||||||| | ||||| ||||  |||||||    
T  238636 cattgcatgttgcttcaaaggatataaattgacaagggtcgaa 238594  T

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