View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_72 (Length: 235)
Name: NF3117_low_72
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44421938 - 44422158
Alignment:
| Q |
1 |
cagtggcgaaattccatctcatcatccctcaagtgtattggtaaggatttgttttccaaattaatgatcttgatcatttattagtcttccaatgtttcaa |
100 |
Q |
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| T |
44421938 |
cagtggcgaaattccatctcatcatccctcaagtgtattggtaaggatttgttttccaaattaatgatcttgatcatttattagtcttccaatgtttcaa |
44422037 |
T |
|
| Q |
101 |
atatcacatatgattctgattagatatacacttttaataatctctttgaacctttaaaacctttgtgtaatacttcagaccaagataaatatcccacggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44422038 |
atatcacatatgattctgattagatatacacttttaataatctctttgaacctttaaaacctttgtgtaatacttcagaccaagataaatatcccacggc |
44422137 |
T |
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| Q |
201 |
taagctctacaaagtccatat |
221 |
Q |
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||||||| ||||||||||||| |
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| T |
44422138 |
taagctcgacaaagtccatat |
44422158 |
T |
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