View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_79 (Length: 215)
Name: NF3117_low_79
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_79 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1088176 - 1088390
Alignment:
| Q |
1 |
gcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatatatgtctagtctttaactatatggttttagtaaatgct |
100 |
Q |
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| T |
1088176 |
gcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatatatgtctagtctttaactatatggttttagtaaatgat |
1088275 |
T |
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| Q |
101 |
taatttgtttacctaagttttgtctcttgtcaatttaacttgcacaaaattgttcctaaaacattctgaaccatctttcaatagttcattctaggcattt |
200 |
Q |
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| T |
1088276 |
taatttgtttacctaagttttgtctcttgtcaatttaacttgcacaaaattgatcctaaaacattctgaaccatctgtcaatagtttattctaggctttt |
1088375 |
T |
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| Q |
201 |
atgaagcattctatc |
215 |
Q |
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| T |
1088376 |
atgaagcattctatc |
1088390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 1072512 - 1072634
Alignment:
| Q |
1 |
gcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggat--tatatatgtctagtctttaactatatggttttagtaaatg |
98 |
Q |
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| T |
1072512 |
gcttccacagtaggtaaatgctatattcttctcaaacatttatgctttttttatggattatatatatttttaatctctagctatatagttttagttaata |
1072611 |
T |
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| Q |
99 |
cttaatttgtttacctaagtttt |
121 |
Q |
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| T |
1072612 |
ctaaatttgtttgcctaagtttt |
1072634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1047702 - 1047765
Alignment:
| Q |
1 |
gcttccacagtaggtaaatgctatgttcttctcacacatttatgcattttttatggattatata |
64 |
Q |
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| T |
1047702 |
gcttccacagtaggtaaatgctatgttcttctcaaacatttattctttttgtatggattatata |
1047765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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