View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_8 (Length: 673)
Name: NF3117_low_8
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 42 - 653
Target Start/End: Original strand, 5774304 - 5774907
Alignment:
| Q |
42 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
141 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
142 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
242 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
342 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
442 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
5774795 |
T |
|
| Q |
542 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774796 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
5774895 |
T |
|
| Q |
642 |
ctctcttcatgt |
653 |
Q |
| |
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|||| ||||||| |
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| T |
5774896 |
ctctattcatgt |
5774907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 202 - 653
Target Start/End: Original strand, 5768189 - 5768627
Alignment:
| Q |
202 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
|
| Q |
302 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcg |
401 |
Q |
| |
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|| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |
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| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat-- |
5768386 |
T |
|
| Q |
402 |
aatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgat |
501 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5768387 |
--tgatgaattacctgaaaaacttccaaatgaaatttggagtcgatttcagagag---------tgccatgttagtaaggctggtctggcaaacgatgat |
5768475 |
T |
|
| Q |
502 |
ggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtca |
601 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768476 |
ggctctgtagacattctcggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtca |
5768575 |
T |
|
| Q |
602 |
gagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgt |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5768576 |
gagggattgtcctttttcgccttgttgatgacaaggtcttctctattcatgt |
5768627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 473 - 650
Target Start/End: Original strand, 5775102 - 5775279
Alignment:
| Q |
473 |
ttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcat |
572 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||| || |||||||||||||| |||||||||||| ||||||| |||| |
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| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
5775201 |
T |
|
| Q |
573 |
cctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctcttca |
650 |
Q |
| |
|
||| || ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||| |
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|
| T |
5775202 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttca |
5775279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
205 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
304 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
305 |
ttaaccagcaattcagcctcct |
326 |
Q |
| |
|
||||||||||| || ||||||| |
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|
| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
147 |
tactcattcgattagttacattctaaataacacaa |
181 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
|
|
| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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