View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3117_low_81 (Length: 207)
Name: NF3117_low_81
Description: NF3117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3117_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 1855300 - 1855133
Alignment:
| Q |
18 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaatttggaatttatgtaa |
117 |
Q |
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| T |
1855300 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaagtgagcataaatttggaatttatgtaa |
1855201 |
T |
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| Q |
118 |
catggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccaca |
185 |
Q |
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| T |
1855200 |
catggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccaca |
1855133 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 1844913 - 1844992
Alignment:
| Q |
112 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtata |
191 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtata |
1844992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 1817969 - 1818039
Alignment:
| Q |
99 |
aaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaa |
169 |
Q |
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| T |
1817969 |
aaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaa |
1818039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 37566827 - 37566744
Alignment:
| Q |
18 |
catttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaa |
101 |
Q |
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| T |
37566827 |
catttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagcttaaa |
37566744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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