View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3118_high_3 (Length: 513)
Name: NF3118_high_3
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Original strand, 2028350 - 2028838
Alignment:
| Q |
9 |
gagatgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2028350 |
gagatgaaggatggtgtgaagaggtttcatgagatggagacagatgctaaaaaggagttttatacaagagatttgcatggatcatttatttacaaaagca |
2028449 |
T |
|
| Q |
109 |
attttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2028450 |
attttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaagattttcctgttgtatg |
2028549 |
T |
|
| Q |
209 |
caggtatgtttgtatgcatacatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaagatgt |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2028550 |
caggtatgtttgtatgcatgcatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaagatgt |
2028649 |
T |
|
| Q |
309 |
gttcaatattttttatattactttttaaaattattgttttagtcgacgtgtaagtagtgcctctgatatccgtatatattgaccaacttatacaaaatat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2028650 |
gttcaatattttttatattactttttaaaattattgtttgagtcgacgtgtaagtagtgcctctgatatccgtatatattgaccaacttatacaaaatat |
2028749 |
T |
|
| Q |
409 |
aaaggatgtgttggtgtgcaagataattaagagataagataggataatcgtatcatatcgcatctcaatttagtgtttgatgagaggat |
497 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2028750 |
aaaggatgtgttgctgtgcaagataattaagagataagataggataatcgtatcatatcgcatctcaatttagtgtttgatgagaggat |
2028838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 1950646 - 1950276
Alignment:
| Q |
9 |
gagatgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagt---tttatacaagagatatgcatggatcatttatttacaaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||| || ||||||||||||||||| |
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|
| T |
1950646 |
gagatgaaggatggtgtgaagaggtttcatgagatggatacagatgctaaaaaggagtacttttacacaaaagatagaaataaatcatttatttacaaaa |
1950547 |
T |
|
| Q |
106 |
gcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1950546 |
gcaattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaagattttcctgttgt |
1950447 |
T |
|
| Q |
206 |
atgcaggtatgtttgtatgcatacatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaaga |
305 |
Q |
| |
|
||||||||||| | |||| ||| | || ||||||| ||||||||||| ||| |||||| ||| ||||| | ||||||||||||||||||| |
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|
| T |
1950446 |
atgcaggtatg--tatatgtatatgtgtaaaatttat-------ttgctccttgaaatttggttattatcaccggtacgaccgacactttagattaaaga |
1950356 |
T |
|
| Q |
306 |
tgtgttcaatattttttatattactt-tttaaaattattgttttagtcgacgtgtaagtagtgcctctgatatccgtata |
384 |
Q |
| |
|
|| ||||||||| ||| |||||||| ||| |||||||| || |||||||| | |||| ||||||||| ||| |||| |
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|
| T |
1950355 |
cgtattcaatattatttttattacttgttttaaattattacttgtgtcgacgttttggtagcgcctctgatgtccttata |
1950276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 10767529 - 10767731
Alignment:
| Q |
13 |
tgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattt |
112 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| ||| ||||| | ||||| || || ||||||||||||| ||| ||| ||||||||||| || || || |
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|
| T |
10767529 |
tgaaagatggtgttaagaggttttatgagcaggatacagaagtcaaaaaagatttgtatacaagagatagacataaatcctttatttacaatagtaactt |
10767628 |
T |
|
| Q |
113 |
tgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatgcagg |
212 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
10767629 |
tgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaaccagaagatattcctgtagtatgcagg |
10767728 |
T |
|
| Q |
213 |
tat |
215 |
Q |
| |
|
||| |
|
|
| T |
10767729 |
tat |
10767731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 2046366 - 2046526
Alignment:
| Q |
57 |
aaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgta |
156 |
Q |
| |
|
||||| || |||||||||||||||||| || |||| ||||||||||| ||||||| |||| | |||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
2046366 |
aaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttg |
2046465 |
T |
|
| Q |
157 |
cttgttccttggct---cctgatactcccaaaccacaagattttcctgttgtatgcaggta |
214 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||| |||| ||||||| ||||||||||| |
|
|
| T |
2046466 |
cttgttacttggctccacctgatactctcaaaccagaagagattcctgtggtatgcaggta |
2046526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 2036989 - 2037149
Alignment:
| Q |
57 |
aaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgta |
156 |
Q |
| |
|
||||| || |||||||||||||||||| || |||| ||||||||||| ||||||| |||| | |||||| ||||||||||||||||||| ||||||| | |
|
|
| T |
2036989 |
aaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttg |
2037088 |
T |
|
| Q |
157 |
cttgttccttggct---cctgatactcccaaaccacaagattttcctgttgtatgcaggta |
214 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||| |||| ||||||| ||||||||||| |
|
|
| T |
2037089 |
cttgttacttggctccacctgatactcttaaaccagaagagattcctgtggtatgcaggta |
2037149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 2050187 - 2050337
Alignment:
| Q |
69 |
tatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttgg |
168 |
Q |
| |
|
||||||||||||||| || |||| ||| |||| || || ||||||||| | |||||||| || ||||||||||||||||||| || | | |||| ||||| |
|
|
| T |
2050187 |
tatacaagagatatgaatagatcctttgtttataatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttgg |
2050286 |
T |
|
| Q |
169 |
ctcctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | || ||||||||||||| |
|
|
| T |
2050287 |
ctcctgatactcccaaaccagaagattttcccgcagtgtgcaggtatgttt |
2050337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 2054193 - 2054346
Alignment:
| Q |
69 |
tatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttgg |
168 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||| ||||| | |||||||| |||||||||||||||| ||||| || | |||| ||||| |
|
|
| T |
2054193 |
tatacaagagatatgcagagatcctttatttacaatagcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttgg |
2054292 |
T |
|
| Q |
169 |
ct---cctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt |
219 |
Q |
| |
|
|| |||||||||| ||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
2054293 |
ctccacctgatactctcaaaccagaagagtttcctgtggtatgcaggtatgttt |
2054346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 2032985 - 2033099
Alignment:
| Q |
108 |
aattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggct---cctgatactcccaaaccacaagattttcctgttg |
204 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| || || |||| ||||||| |||||||||| |||||||||||| |||||||| | |
|
|
| T |
2032985 |
aattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactctcaaaccacaagagtttcctgtgg |
2033084 |
T |
|
| Q |
205 |
tatgcaggtatgttt |
219 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2033085 |
tatgcaggtatgttt |
2033099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 2057169 - 2057280
Alignment:
| Q |
88 |
gatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaacc |
187 |
Q |
| |
|
|||| ||| ||||||| |||||| ||||| | |||||||| || ||||||||||||||||||| || || ||||| |||||||||||||||||| ||||| |
|
|
| T |
2057169 |
gatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactccaaaacc |
2057268 |
T |
|
| Q |
188 |
acaagattttcc |
199 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2057269 |
agaagattttcc |
2057280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 48908788 - 48908694
Alignment:
| Q |
125 |
ctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt |
219 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
48908788 |
ctcaccagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggtatgttt |
48908694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 28786228 - 28786134
Alignment:
| Q |
99 |
tacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaaga |
193 |
Q |
| |
|
||||| ||||||||| || | ||||| ||| |||||||||||||||||||||||| | ||||||||||||||| || |||| ||||||||||| |
|
|
| T |
28786228 |
tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga |
28786134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 28713393 - 28713345
Alignment:
| Q |
105 |
agcaattttgatttgtatagctcaccagcactcaattggagggatactt |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
28713393 |
agcaattttgatttgtatagatcaccagcacttaattggagggatactt |
28713345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 28736664 - 28736619
Alignment:
| Q |
108 |
aattttgatttgtatagctcaccagcactcaattggagggatactt |
153 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
28736664 |
aattttgatttgtatagttcaccagcacttaattggagggatactt |
28736619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 28743290 - 28743245
Alignment:
| Q |
108 |
aattttgatttgtatagctcaccagcactcaattggagggatactt |
153 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
28743290 |
aattttgatttgtatagttcaccagcgcttaattggagggatactt |
28743245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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