View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3118_high_5 (Length: 435)
Name: NF3118_high_5
Description: NF3118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3118_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 17988979 - 17989388
Alignment:
| Q |
19 |
acagaccacctatcccaccaatatacatgcagatatttgaatgtgttttatcacctcacttttggaaaagttccgcaaatgttcctgctctcttgcgtct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17988979 |
acagaccacctatcccaccaatatacatgcagatatttgaatgtgttttatcacctcacttttggaaaagttccgcaaatattcctgctctcttgcgtct |
17989078 |
T |
|
| Q |
119 |
actacaagtattcctacaaaaggcacctaatgagataagccaggtgaatggactgaacaaattacaagtcatcagtgaaaatgttaatcctgcgaatcag |
218 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17989079 |
actccaagtattcctacaaaaggcgcctaatgagataagccaggtgaatgaactgaacaaattacaagtcatcagtgaaaatgttgatcctgcgaatcag |
17989178 |
T |
|
| Q |
219 |
gcagcatttcttgaactttgcaacactttcatctctcattagtttgagtaagttcgtacttgagttgttttcttctgttttgatcgtgcgaatggtttac |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17989179 |
gcagcatttcttcaactttgcaacactttcatctctcattagtttgagtaagttcgtacttgagttgttttcttctgttttgatcgtgcgaatggtttac |
17989278 |
T |
|
| Q |
319 |
tgttcattactcttcgttgatttacccttgatatatttagtgatacataatattgtccttttttgtttcaaattgtttgttgctgttgttattattctgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17989279 |
tgttcattactcttcgttgatttacccttgatatattttgtgatacataatattgtccttttttgtttcaaattgtttgttgctgttgttattattctgt |
17989378 |
T |
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| Q |
419 |
tttcatctca |
428 |
Q |
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|||||||||| |
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| T |
17989379 |
tttcatctca |
17989388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 375
Target Start/End: Complemental strand, 9750728 - 9750534
Alignment:
| Q |
183 |
caagtcatcagtgaaaatgttaatcctgcgaatcaggcagcatttcttgaactttgcaacactttcatctct-cattagtttgagtaagttcgtacttga |
281 |
Q |
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|||||||||| || ||||||| |||||| ||||||| ||||||| ||| ||||||||| ||||| || | |||||||||||||||||| |||||||| |
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| T |
9750728 |
caagtcatcactgcaaatgttgatcctgtgaatcagacagcattgcttcaactttgcaccacttacaaccgagcattagtttgagtaagttggtacttga |
9750629 |
T |
|
| Q |
282 |
gttgttttcttctgttttgatcgtg-cgaatggtttactgttcattactcttcgttgatttacccttgatatatttagtgatacataatattgtc |
375 |
Q |
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|| |||||||||||||||| ||| | | |||||| |||| ||| ||| ||| || || ||||||| ||||||||| ||||||||| |||||| |
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| T |
9750628 |
cttattttcttctgttttgaatgtgcctattggttttctgtccatgacttttccttaatctacccttaatatatttaaagatacataacattgtc |
9750534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 9751531 - 9751390
Alignment:
| Q |
19 |
acagaccacctatcccaccaatatacatgcagatatttgaatgtgttttatcacctcacttttggaaaagttccgcaaatgttcctgctctcttgcgtct |
118 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||| | |||| |||||| | | ||||||||| ||||| |||||||| || ||||||| |
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| T |
9751531 |
acagaccacccatcccaccaatctacatgcagatatttgagattcttttgtcacctgattcttggaaaagaagcgcaagcgttcctgcccttgtgcgtct |
9751432 |
T |
|
| Q |
119 |
actacaagtattcctacaaaaggcacctaatgagataagcca |
160 |
Q |
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||| || | ||||| ||||||||||| ||||| || ||||| |
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| T |
9751431 |
actccaggccttccttcaaaaggcaccaaatgaaatcagcca |
9751390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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